DreINT0123832 @ danRer10
Intron Retention
Gene
ENSDARG00000015460 | racgap1
Description
Rac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]
Coordinates
chr23:33846620-33847042:-
Coord C1 exon
chr23:33846840-33847042
Coord A exon
chr23:33846763-33846839
Coord C2 exon
chr23:33846620-33846762
Length
77 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
GTTTAAACGTTTCTCTGCAGGAC
3' ss Score
8.84
Exon sequences
Seq C1 exon
AGTTCATTCAGCTGGCCATAAACTTTGAGGACAACCGTCGTAGATGGCTGAGACTCGAACAGGAGCTGAATGCATGCAAAGAAGTGCTCACTAAAGCTGAGACGGAGCGTGGAGCTCTGGAGGTCAAGCTCAAACATGCTCGTAACCAAGTAGATGTGGAGATCCGTAGAAGACAGAAAGCCGAGTCTGACTGCGCAAAGCTG
Seq A exon
GTTTGTGGGATTTTATTTACATGCGGCAAATCACGTAGACCTGTTCTCTGAATTTGGGTTTAAACGTTTCTCTGCAG
Seq C2 exon
GACCGTCAGATCCAGCTCATCCGGGAGCTGCTGGTTTCTGAAGGCTCTAGTAGCAGCATCCAGTTAAATGAGGAGCAGCGCTCTGCTCTGGCCTTCCTAAATGCCCGTTCTCAGAATCCTGCAAATTTGAACACTAGCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015460:ENSDART00000027959:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGAGACTCGAACAGGA
R:
GGATGAGCTGGATCTGACGGT
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]