RnoINT0123522 @ rn6
Intron Retention
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141294134-141295578:-
Coord C1 exon
chr7:141295373-141295578
Coord A exon
chr7:141294271-141295372
Coord C2 exon
chr7:141294134-141294270
Length
1102 bp
Sequences
Splice sites
5' ss Seq
CTGGTGTGC
5' ss Score
3.46
3' ss Seq
TACTCTGCTTTGGTCTGTAGGAA
3' ss Score
8.25
Exon sequences
Seq C1 exon
TTGAATTCATCCAGGTTGTAAAGGACTTCGAGGACTTCCGAAAGAAATGTCAAAGAACCAACCAGGAGCTGGAGAAATTCAAAGATCTGTTGTTGAAGGCAGAGACTGGGCGGAGTGCCCTGGACGTCAAGCTGAAGCACGCCCGTAACCAAGTGGATGTGGAGATCAAACGGAGGCAACGAGCTGAGGCCGAGTGTGCGAAGCTG
Seq A exon
GTGTGCATTGCTTTGCGTATTAGACTGGTGGGCGGGGCATTGTCTGATGATGTCTCTACTTAACATAAATACCCAGTTTCTGCTTCTACATGAAGAACTCATTTGACATCTTGCCTGTGATTAGGGATGAAACGGAAGCCTGTGATTTCTGCTTTTCAGTTTGAGATTAAAATGTATGTTCTCCTTTAGGCTTGAAACTGTTTTTCACTCGACAGGCTTCAAGTGAGAGTTTAAAGAGTTAAAGCAAAGCAGCTAAAAGTGCTTGCCTGGCGTGCACAGCCCTGGACTAAGGAGTTAAAGTGGGGATCAGAAGGAAATTCTGGATACTTAGCTAATACAATTATTTGCTGTTCGGTGGGGTGTGTGTGCCTTTTGAGACAGGGTCCACTATTTAATCCCTGACAGCCTTTCACTCAGGTGATTCTCCTGCCTCTGCATCCTGAGCAGTAGGTTTAGTGGTGCATGCCAGTGTACCCAGCCTGTGTTGTTACTATAAATTGGAAGAGCATTGTCCTCTTTATGAGTTAGTGGCTCTGGGCCTTTGTCATCACAGCTCTCTAGCACAGGGTGCAGGGCTGGATGCAGTCATATCGAGCAGTGTCAGGTGGGTCATGGTGCCGCAGTGGAGAGCTTTACTCAGGGGAACTAATCCATCTTAGCTCAGTGCAGATGCCCCAGGAAGCCCAAACTGTCTGCATTACAGCTTTGTGTCTATTTTAATGCATTTTGTTCCGTCATGTAGAGAAACATGCGACTGCCTTCTTTGATCCATAAAAGAAGCTAATAATTGTTCTGATAAAGACAACACTAAGTATGTTTGCTCTGTGAAATCTATTCTGGAGCTCTCGTTCTATATCATTCTCCCTGGTTTAGCAGTTTAAGGTCTTCTAGCGGAGATCTTGCTGTTCTATATGGGGTTGCTTTCACTCATCAGAAACCAGCCACAGTCAGGGCTTGGTGTGAATTAATATTCTATTGTTGTAAGGTCTTCCTGAAGGCCATTTGCATAATGTATTTTAATGTCTTCTGCCTATCCCATAAATTTGAGGTGAAGCTTTCTTCTCTGGCTGGTCATGATGTTTTACTCTGCTTTGGTCTGTAG
Seq C2 exon
GAACAACAGATTCAGCTGATTCGAGATATACTCATGTGTGACACAACTGGCAGCATCCAGCTAAGCGAGGAACAAAAATCAGCTCTGGCTTTTCTCAACCGAGGCCAAGCATCCAGTGGCAACGCTGGGAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033:ENSRNOT00000071885:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.181
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(48.9=100)
A:
NA
C2:
PF059116=DUF869=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTCATCCAGGTTGTAAAGGACT
R:
CTATTGTTCCCAGCGTTGCCA
Band lengths:
342-1444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]