HsaINT0136510 @ hg19

Intron Retention

Gene

ENSG00000161800 | RACGAP1

Description

Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:9804]

Coordinates

chr12:50399039-50400419:-

Coord C1 exon

chr12:50400217-50400419

Coord A exon

chr12:50399176-50400216

Coord C2 exon

chr12:50399039-50399175

Length

1041 bp

Sequences

Splice sites

5' ss Seq

CTGGTGTGT

5' ss Score

4.96

3' ss Seq

TACTTTGCTTTGGTCTGTAGGAA

3' ss Score

8.05

Exon sequences

Seq C1 exon

AATTTATCCAGTTGGCGAAGGACTTTGAGGATTTCCGTAAAAAGTGGCAGAGGACTGACCATGAGCTGGGGAAATACAAGGATCTTTTGATGAAAGCAGAGACTGAGCGAAGTGCTCTGGATGTTAAGCTGAAGCATGCACGTAATCAGGTGGATGTAGAGATCAAACGGAGACAGAGAGCTGAGGCTGACTGCGAAAAGCTG

Seq A exon

GTGTGTATTGTTTTCCGTGCTAGAACAGTGATGATGCAGGAGGGGGAAGGCATTGTCTGACAGTTTCCACTTGCCAAATATACCTAGTTTCTTCTTCCACATTAAAGAACTGAAAGTGACCTGTTCTTTAACAGCTTGCCCATGATTAGAGCTGAAATTGCAGACTAGGAATCTTGTTCTTCATAATTTGAAATTTAAATGTTTTTGTCACTTAGACTTGAAACTTACTTAACAGACAGATTTCAAATGAGAACTTAAAGAATTAGAGGAAAAGGGAGGGAGGGAGATCCTAACGTACTTGATCTGTCACAAGTTATTGGCCATCCTTCATTGTTTATTTTAAGTGCTACCCGGAATATCCATCCTTACATGAGTAGCTGGTACTTTGTCATACATACAGGCAAGACAACTGTGACTCTTCTTTTCATCACCCCTCTCTAATTCAGGGTAAAAGGCTAGATGTATTCAACCAGTTGAGCAATGTGACTGACACAGAACACTATCATTTTGATGTGCCAGGATGGGTCATAATGCAAAGGAAAGCCTTTACTGGGAGGGACTAATCCATCTTGGTATACAGTGTTAGATGCCTCAGTAAACTCAAATTGTCTGGTTCCAGTGCATTATAGCTTTGTATCCATTTTAATGCATTTTGCTCCACTACTTTGAGAGGTGGGTGGCTGCTTTGATCCGTAGAAGCCAATATTTGTCCTGATAAAATGACACTAAAGTGTTTTTGCTATGTGAAATCTATTTTGGGACTCTCATTTTGCATTATTCTCCTCTTGGATTAGCAGGTTAATCCAAAAGTCTTGTAGCAGAAACTTCGCTGTTCTAGATGTAGTTCATTTTACCAGTCAGAAATCAGAGACACAATCTGGGTTTGATGTGAATTAATATGCTATTGGTGTAGCAGCCTTCCTGAAGGTCCATTTGCATAATGCTGCATTTTAATGTCTTCTGGTCTGCCTGTCCCATAAACTTGAGGTGAAGCTTTCTCCCCTGGCTAGTTATGATGTTTTACTTTGCTTTGGTCTGTAG

Seq C2 exon

GAACGACAGATTCAGCTGATTCGAGAGATGCTCATGTGTGACACATCTGGCAGCATTCAACTAAGCGAGGAGCAAAAATCAGCTCTGGCTTTTCTCAACAGAGGCCAACCATCCAGCAGCAATGCTGGGAACAAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000161800-RACGAP1:NM_001126103:5

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.348

Domain overlap (PFAM):

C1:

PF111803=DUF2968=FE(62.6=100),PF078886=CALCOCO1=FE(65.0=100),PF052956=Luciferase_N=PD(92.9=76.5),PF140731=Cep57_CLD=FE(64.4=100),PF0026115=Tropomyosin=PU(71.7=55.9)

A:

NA

C2:

PF111803=DUF2968=PD(14.4=34.8),PF078886=CALCOCO1=FE(31.9=100),PF140731=Cep57_CLD=FE(32.8=100),PF0026115=Tropomyosin=PD(41.2=60.9)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000309871