GgaINT0001041 @ galGal3
Intron Retention
Gene
ENSGALG00000006271 | RACGAP1
Description
NA
Coordinates
chrE22C19W28_E50C23:317116-317814:+
Coord C1 exon
chrE22C19W28_E50C23:317116-317318
Coord A exon
chrE22C19W28_E50C23:317319-317677
Coord C2 exon
chrE22C19W28_E50C23:317678-317814
Length
359 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GATATTATCTCTCTTTTCAGGAG
3' ss Score
10.08
Exon sequences
Seq C1 exon
AATTTATTCAGTTGGCAAAGAACTTTGAAGACTATCGAAGAAAGTGGCAGAAAACTGAGCAGGAGCTTGGTAGGTACAAAGACCTTCTGATGAAAAGTGAAGCTGAGCGTAGTGCTTTGGATGTGAAGCTGAAACACGCTCGCAATCAAGTGGATGTAGAGATCAAACGCAGGCAAAAAGCTGAAGCAGACTGTGAGAAGTTG
Seq A exon
GTGAGTGTTTCCTTTATTACTAATTAGCTCCAGTTAATGTGGAGAGAAGGTGGTTAAACTGTACTTATCCATGGGAAATAAGGACTGGAGGGGGAAAAAAACAAGAGGGGGAATAAAAACATCAGTGAGAAGTTGGTTTGGCTCCTTGTAATGGCCTTCTGCTTTGGTTTGGAAGGCAAAGGGCTGCTGTTTGGAGGTGAGCTGCTATTGCTTGGCAGAGCCTGGGCTTTGCACTTAGCAGCAGCCTGAGTGCTGGACTTGCTCTTAGCAACTTCTGAGAGCCTATCTGTGTGGTATCTCAAATACCTGTGATTGGTTCATGTAATTAAAACGGCTTCTGATATTATCTCTCTTTTCAG
Seq C2 exon
GAGAGGCAAATACAGCTGATTCGAGAGCTGCTCATGTGTGATGCATCTGGGAGCATTCAGCTAAGTGAAGAACAGAAGTCTGCCCTTGCCTTCCTTAACAGACCACAGGTTTCTGTAGGAGGTTCAGGCAATAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271:ENSGALT00000010135:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTATTCAGTTGGCAAAGAACTTT
R:
TTGCCTGAACCTCCTACAGAA
Band lengths:
334-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]