DreINT0125494 @ danRer10
Intron Retention
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1900542-1902154:+
Coord C1 exon
chr11:1900542-1900600
Coord A exon
chr11:1900601-1902062
Coord C2 exon
chr11:1902063-1902154
Length
1462 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTGTTTGTGTGTGTGTTTAGGTT
3' ss Score
11.24
Exon sequences
Seq C1 exon
GTATGGAAAGATCGTGTCCACCAAGGCCATTCTGGATAAAACTACCAACAAATGCAAAG
Seq A exon
GTGAGAAACTGCACATCAATACGTTCTCAGAGGATTGATTTGCAGTTTACAGTGTTTGACCGCGATGTGCGGACGTCTGTCTATTTTGGCAATTTAGGGCGCTTTCACACCTGCCTCATTTAGTTTGATTGAATCACACTAGAGTTTGTTTTCCCTTTTGGTGTGGTTGGTTTGGGCAGGTGAGAATGCAGCAATTGTACTCGAGTGCGCACCAAAAGCGGATTAAATAAGCGTATCGAGACCTGCTTGAAGAGGTGGTCTCGGTACACTTTCAAACGAACCCTGGAGAGGTTTGTTTATGGTGAGAATATGATCCGTACTAAAACAGGTCCAACTGTGGTCTGCGCCTTTTGGACTAATCCAGCTGCCGTAGGCCGATGCGCTGTGCATTATGGGATATGGAGGAAAAATATTTGTTGACAGCGCTTTACCAACAGAGAGAGAGAGAGAGAGGGAAAACATTACCTGATGTTGGTAATATTTCCGCAAGATGAGCATGTTGGAGTTTAGCTAAATTAATTCACGCCTCCTCCTGAAGTGACGAGCATTAAACACTGTTTTCCTGCCGCGCTTCATTCTCGAAATGTATAGTTCGTCTAAAGCAGGGATGCAATCAGTCAGCGCAGTCGTCCTTGCAGAGTAAAAACGACATTTTGTGTCTGCCGGTTTTGTTTACCTGCGGGAGTTCATTGACATTTTCCTGCACGTGAATTCTGACCAATCAATAAGCAGTTTAGGAAATATGTTCAACAACATCTGGCCAATGAGAGATGTGGATTTTGTCAGATGACTGCATTTTGGTTTGTTTCAACTGGTTTGGACCAAAGCCAGCAGTGTGGTGTGAAAACGACCCAAAGACGGCAGAAGATGCAACAATGATCATTTATTACCCTTGGTCGGGACCAAATGAAGCGAACTACAGATGTGAAAGCACCCTTACTTTCATGTTCGTCACCTGGCAACAGCCGTACACACAACAGCTGCTTGATGACGCAAGCGTACCGGGGTTCAGAAGGAAGAAGACAGTGTAAACACAAACCAACCGAGAAGGTGGTATGGGGGGAAATCGAAATTGGGGTACGGTCCAGGCAATTGAACCAAGTGTGAAAGCACCCTTAACTAGCTTAACTAGGTTAATTAGGGTAAAAATAGGGTAATTAGGCAAGTCATTGTAAAATTGTTCTGGAGGCAATCCAAAACTAATATAGCTTAAGGGGGCTAATAATATTGACCTTAAAATAATCAAAAACTGCTTTTATTCTAGCCGAAATACAACGCATAAGACTTTCTCTAGAAGAAAACATATTATAGGAAATACTGAGAAAAATTCCTGCATCTGTTCAACATCATTTGGGAAATATTTGAAATATTATAATAATTTAGACTTTAACTGCATGTATTTGAGCTTAAAAGTACTCATGTTTGAATATTTATGCTTGTGTGTGTTTGTGTGTGTGTTTAG
Seq C2 exon
GTTATGGCTTTGTGGATTTCGACAGTCCTGCAGCAGCACAGAAGGCCGTGACCGCGCTGAAGTCCACCGGTGTTCAAGCTCAAATGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179:ENSDART00000065470:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.4=100)
A:
NA
C2:
PF0007617=RRM_1=PD(39.7=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]