MmuINT0132947 @ mm10
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128145673-128146660:-
Coord C1 exon
chr10:128146602-128146660
Coord A exon
chr10:128145765-128146601
Coord C2 exon
chr10:128145673-128145764
Length
837 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGACGCTGTTTCCCTTCCAGGCT
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTATGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
Seq A exon
GTGAGAGAGAGACCAGCTGCTCTCTGCACCTCTGTCTCCTCCTGCTGGGAGGCTGGGCAGACAGCACCTGGGAGGGGCTGGGAGGTTTGGGGCCTAAAGACCAACATGTATTTAGACTCACTGGTGGCTCGAGAGCTAGAGCTGAAAATACTGTTAGGGGCAGTGCTGGCAGAAGGAAGGAAGGCTGTGTGGTGTGCCATCCCTTCTCAGCTCCCTCTGGGTGAAGTGTCTTTCCCCAGGTGGGAAGGTGCTGGGAGAAGTTTCTCAAGGTCTATGTAAACACCTTTTCTAGGATTTGGGGGAACTGCCCAGTAGGTGTTCTTTTTCCGATGCTGAATAGTTGGGGGTGAGAGGGAGGGCGGCCGGGGGGGGGGGGGGTCAGGGGGGTGAGGGGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGACATCTCTGAGAAGGGCAGCTTCCATCTGGTACCAGCTTGCTGTGCTGTATTCCTCCCTCCCTAGATTTCTGGGGGCTTTCTGCAGAGGAGCTGGAGGGCCTTTAGACATGCATGAGGGTATAGGATTTAAAACCAGGTCTGAAGCTCTAGGTTCTTTCTTAATGAGGAGAAAGGCAGAATGCCAACCACAAGGTGTTCTCATGTCCCTGGGCGTCCTTAGCCACAGAGTGGGTCTGAGCTCTGGTGAGGGGTCCCATGGACAACTCTCAGTCTCCCTTCCCCCCCAGCCCCCACTCCATCATTTACATAGTCCATACCTCTTCTTCTGTCTCCTGAAAAGCCTAGGCCTCCCACCTCTCTTATACCTCCCACCTCCCGTGACGTGACGCTGTTTCCCTTCCAG
Seq C2 exon
GCTATGGCTTTGTGGACTTCGACAGTCCGTCATCAGCACAGAAAGCTGTAACTGCACTGAAAGCCAGTGGTGTGCAGGCACAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043:ENSMUST00000099139:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.323
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF0007617=RRM_1=PD(38.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types