HsaINT1029005 @ hg38
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56568975-56569990:+
Coord C1 exon
chr12:56568975-56569033
Coord A exon
chr12:56569034-56569898
Coord C2 exon
chr12:56569899-56569990
Length
865 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGCTGTTTCCTCTGTTCCAGGCT
3' ss Score
10.22
Exon sequences
Seq C1 exon
ATATGGCAAGATTGTTTCCACTAAGGCCATACTGGACAAGACCACAAACAAATGTAAAG
Seq A exon
GTGAGAGAACAACTGTCCTTGGTGTTGGAGAGCACCAGTAAGTGAGGCCATCCCTTGACACTGCCCTTTACTGCTGAGAGTCCTGAGTCTACAGTGTCAGCGAGAAGTCCCTGAAGTTTTTAGGCTTAAAAGATTAGGAGATATTTAGATTCTTTGGTGACCAGATAGCTAGAGCTGAAAATGCTGTTTAGGGGCCCCAAGGCCAGAAGACTGTACAAAACACCTTTGAGTCTACTGAGCTTATTTTGGACTTTGTATTTCCCTGGATGAGGTGGTAGAAGTGGGTAAGTGAGATTTTCTTCTGCTTAGCAAAGTCATGTAAATGCCTTTTTTGGGGAGTGTTTTGGTGGGTGTTATTTTCTGAGGGTGAGTAGTTTTATTGGGGTTTTGAGCAGTTCTAGATAGAGCTGGAAGAGTGGAAGGAAGAGAAAGGGCTATAAGCTGGGGTGGTGAGGGTCTTCTTCCAGCAGGTGGCTGGTGGTCTGCTCTGGAGAGGCTGCATTCCCTACATGCCTAGCATTTCTGGGGTATATCAAGAAAAGAGGGGAGTGAATTCTTTTAGAGGTGTAGGGGGGCTTTGGGTTATTAGCAGAGCCTAGTTCCTGAAACCTCAAATTTCTTAAGGGGGAGGGAGAAGGGCAGGGACACCAGAGTAGCTCATTGCCTTGGCATTCTTAGCCACAAAGTAGATCACATCTCAGGGTTTGAGGAGCATGTGGATAACTACCTGAAACCTCTCAATAGCTCTTTCTCCCTCCCATTTCTGTTACATGGATCATAACTCTTCCTCTGTCTCCTGAAAAGCCTGGACCTCTCTGTTCCTTACACCTCCCACTTCCTAGTGATGCTGTTTCCTCTGTTCCAG
Seq C2 exon
GCTATGGCTTTGTAGATTTTGACAGCCCTTCAGCAGCACAGAAAGCTGTAACAGCACTGAAGGCCAGCGGTGTACAGGCACAGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067:ENST00000262031:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.272
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF0007617=RRM_1=PD(38.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains