BtaINT0123455 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:36137115-36142181:+
Coord C1 exon
chr2:36137115-36137173
Coord A exon
chr2:36137174-36142089
Coord C2 exon
chr2:36142090-36142181
Length
4916 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AATTGTGTTTTGCATTTCAGGTT
3' ss Score
10.47
Exon sequences
Seq C1 exon
ATATGGGAAGATTGTTTCCACAAAGGCAATTTTGGATAAGACAACAAACAAATGCAAAG
Seq A exon
GTATGTTTCCTTGTCTGATGATTTACTAAATCAGAGCTTCAAAAAAAGAGTGGAATTTTAAACCTGATCTTTGATTTCAAAACTACCTCCACTTATTAAAACGCGAATCTTACATGTCAACCAGTTTCTGTCTTGCACGGTGTCAGCATATTGCTTACGTTGGTCCCTGGTTGAGTTTTGGCTGGAAACCCAACAGCAGCTAGCCGCTTGCCAGAATCCCAGATTTGACGCCAGTAGAGTTAACATGCAAAATACTGGCTGGCATTTATCCCCTGCTTTTAAAGGGGGAGTAGAGTTAGAAAATAGCTTTTCTTTCCTGAGCCTGAGGAGATTAGAGCTGCTTACCGAAGACCATTGGACTGTACTAAAGAACTGAAAAGATTACATATTGTGCAAATTGGCTCTATTAATTAGAATAGAGTAGTTTTAAGCAGTACTTAATTACGTGTTTCAATACTCCCAATTGTTCTCTGCTGAATGCCTGTTGACAATATTGGCAGCAGGGAGGGGAGAACCATTTTCACTGACCAAATTGTAATCGGGAGGGGAGGTCATACGCCCCTTTGAAATATGCTGCTGCATTAATTTGATGCACTGACCTTCAGTTTTCTGTGTAATTAGGATGAGCTCATCCAGCTCCATGAGCTGGAAGAGGAGGCGTCTACAGTAGGCAGCACTGATGCTCTGTGGCTCTGACTTTTAATGATCCAGCATCTTAACAATAGGCTTGTGATTTCTAGGAAAAGGGAAGAATGGAGTCAGCTGACTTTGAGTCTAACAACTGACCCCATGAATTGAAATAAGGTTGACAGGAATAGGCAGAGAAGGCAAATCTCCTCATTAATTAGACCCCAGTTTTCCAAGTAGGGGTGACGGTTGTGACTTAGCACAATCTGAACACGGCAAAGAACGTCAATGAAGTCTATGGTACGGTGGGGCCTCGCCTTAGAAGCTGGCCGTTTCCTTTAATCTAGACTTGAAGTGATTCATTGTACTCCTGTCTCTTCTTCAAAGCTCCTGAATTTAAAGGAGCTATTGTGGCAAATATCTGAGCCCATGTTTAATCAGCATGGCACATTCAGGCAGTTTTGCCGTAGGACACTGAATAGAGCAGTGCTTTATGTAGAGCGATACTCAATTAATATTTTAAGTGAATTAAACTGGAGAGAGTCTAATTGTAGACTGAAATGTTTCCCCAGTTACCAGGTTAGTCTTGTTTCACATATTTTAAAATGATTTGGATGAGCAGGGACACAGGGAAAAACTTTGTGGTTTTATCACCAAGAGATGGACTCATGCAGGTATACACCAGGAAGCTGATCTCAGCATTTGTTTCAAACCAAGAGAGAAATCATAGTAGACAATAGTTTTACAGCCTTACCTACCTTTCTTCCTCCTGACCCCACCCAATTCCCTCTCCCTCAAAAAAGAAGTCTTCACATAGGTCAGTGTGTTAAAAAGCAGAGCTGCCCTAGTTAAGTGAGAGAGAGGACCGAGCGGCCTCCCTGAGTGAATTCTCTATCACACCTCTGCCCCGGACACTACTGTTTCACACTCTTCTCCAACACGACCCTATTGCCAAGAAACCAAAAGTCCACAGATGCTTAGCGTGATCTAGAAATGCTGTTGGTGGGAAAAAAAAAATACTAAACCTAACATCTTATAATAATATAAACCCATGATATTTGACAAGAGTCCAAAGATTAGTGGGGAGATTTGTGGGGCTTCTAAATAAGTATAAATCAGAACTAGTTTTCGATACATGTCTCCTAGAGAATTTCCCCTAAATTGAGTCGTAGGAGAGCCTGGCTAGTATGTGGGGGCAGTGATAGAAACCTTATAAGGCTTTTGTGTGTCACACAGGCCTCTCAGAAAGGAAAAATGATAGATATCTGGGGTGTGGATGAGTGGGTGAGGAGAGAGAGTAAGCAGGAATGGATTTATAAAATTCTGGAACGGGCAATGAAAGAGCTCCTGAAAAAAAGTAATTTTGGGACGAGTGAGAAAAAAAAAAACAGCATAGCTCACTATAAAGACTGGTAACATGTTAGTAGCCATGTTATAAATAACTTGGGAAGGTGGGGTGGGTGGATGAATATAGGTAATGCTTAAGAATATTAGTATAAATGAAAAAAAAAGATTAGTATAAATGAAAAGTGCTTGTATTGTATACTAATTTTTAGAGATTGAAACGATCAAAGAATTTCATACCTGAAAATTAGAGACCTTAGAGGTCATAGTACATTTTTTGGTCACAAAACATATTTGGGGGCCTTTCTCCAGAAGACAAAATTAAGCTGAAGGAAACATTGCTCTGAATAACATGTTGCTGTAGTTATTAAATTTAAAAATTTATTATTCAGTTGCTCTCCTACATTTCAACTTTTGCCAGTTTTTAGCCAACAAAAGGTGTTTAAATGCTTTTCAGCTCTAGTGTACATGCCAGTTCAGGACCAGGAAAAACTTACAAAGGATTGATTGTGCTCAGTGTTTACAGAGTTGCATATAAGACCAGAAAACACAAACGCACACAAAATGGGTGAGGACAAATCAGACCAAAGGAAAAACAGGGGCAAGAACAGGAAGCTTCCTATTACTACAGAAATGGCCCCGCGTTTCCTGGTTGCCAAACCAAAAATAACGTACCTACTCCCATGATTCAGTAATCTCAGTGTAGAAGAAAACCCAAGAAGCAGAAATGCCGTAACTATGCCTGGTCCCAAGACCTGGGAGAATCCTCCTGGGGTTCCAGTGAGAGGATGCTGTGTTATTTAGTGACTCCCACCTTCAAAAATATCTGTACACATGTTTAAATAATGAAACCCTAGAGAATCTGTGAGACCCATTTATATACTCTTATATTTACTTGAAAGTATTATAACAGGGAAAGTGAAAGAGCACACGGTTGCATGCATAAGCATGTTATATTTGTTTTAAGCAAATATTTATGAAACAGCTGTGTAGTGGCATTGGGCAAGGCCAGAAAAGAATGTAAACAGTTAGCTAAGATGCAGCCATTATGGATTTTTCCTAATAAGGAAATAACAGATAAAATAATACTAACACAGTACTTGAGTAGAAACTTCAGCTACATTAACATCAAACTTGGGATCTTCATCTTACTGTAATTTATTGATAACAATAAAATTAAAGAAGGACTCTTAAACATCCATCAGATATTACATCATTTCAATGTAGTTGGGTGTCCGTTTATGACCTGCTTAAGTTCTGCTTGGTAATAAAATATGTATGAGCGTGAGAGAGTGAGAATGTGTGTGCCCACGTGTATCTTCATAATAGGTTGCATATTAGCGTTAATAACAGATTTCTAAAAAAATTTGAAGTATATTTAACCTAATTTCTAACCTGGCTGTTGAGGAGCATTCTCTGTTTTTACCTGGGTCAGCCTCCTCTTTTCCTTCCAACCTGGGTATTTCTCTACTCACTGTCAAAATCAAATTAAGCCTTATTCCATCACAGTTCCAAGTAATAGAAAGAAGCTGCTATTTGTTTTAGCTTTGATACTCGTCTCTCTAAAATACCTATTTCTGTAATTCATAGTCTAGTTCACTAATTTTTTATCAGGCCAATATTTTTGTTGCTAACACTGCACACTCTTTGAACTACTTCTGAAGTTTCTGTTTTGTCGTGTTGATGTGTATATTTTGACCCTAGTTCCTTCCTGTCTAAATTACTGTAGCTTTATAATATCTATAAATAAATGATAGGCCCGGCCCCTCTTCTGTGTAACTTCCAGACAAGACTTTCCTTTTTCAAAATATTCTTACTCATTTAACATTAATTTGATAATAGGTTTGAGTCCCAAGTAGATCTCTGTTGATATTTTTGCCTGGAACCCTGATCATTTTGACTGATGTGCTTTTAAATACAGTTGAACCTTTTCTTAGTAATTTAAGACTTATCATAGTGGCACATTAGTGATTGCCTGATTTAATACAGTGATGCTTATGGGATTGGTGAGGTTCATGGAACTGTTGCTCATGCGCTCTGTAACGCCTGCTCTTTGTATTGTTTTCCTCTTTTACTGGTTGCTGTTAGTTTTCACTAGGTACCATCCATATGACTTTGTAGCAGCCCTACCCTCAACCTGACCCCTCTTTCCTCTAATTTCCTGCTTTTGATTTGTTATAGCCAGGGAAAATAGCTGACCAGCTTGTTTAAAATGTTTGAAAAGCTATGGATAAATAAGCTTTGAACCAGGGCCTCTCTTAGGATGTTGTTTATTTGTTTGTTTTATTATGTTTTGTTTTTAGACTTAAGGCCAGGAACGTGAAAACAGCTCTCTTGGGTTTCTGGAGCCATTTCCCCCCTGCCCTTTATTTATTTTGAAGAGATTGTGAGCTGTATTTTAGATAAATAAGTAATATTTTTAAACAAGTTCTAATATGTAGATTATTTTATATTTGGAGTATCCAATGGTTGTACTGAATTTATTTCAAAAATGCAATTTACAGAATAAACAAATATTTGTAAGCTCTGTAGGATAGCTCCATCTTTCTTACCAAATTATTAAAAATGCTACTTTTTTCCTGAAGTTGATTCCCCCGGCCCATTTTTTTTTTTAATCTTGATTGATAACTTGGATGTCTTCCTCCCCAATCCCCTGCCTCACTCCAGCAAGTACAGACACTTGAGAAAAAGATCTGGAAAAGGAAATAAACTGGTTTCTCTTTTTTCCTTTTTTTTTAAACTTTGAAGGGAAACTTACCGAGCCCAGATAGGCGGGACGGACAGCCTGGGGAGGACATTGCAGTGCAGCTATAAAGCTTGGGACTGTCAGAACGTCAGGGCTTTGATTTTTGTTGCCTGCCTCAGAGACCAAATGGAGTCATCCTTTCCCTCTTTACATAATCATAAAATAACAGCTTAAATACTAATTGTGTTTTGCATTTCAG
Seq C2 exon
GTTATGGTTTTGTTGACTTTGACAGTCCTGCAGCAGCTCAGAAGGCTGTGTCTGCCCTGAAGGCAAGTGGGGTTCAAGCTCAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180:ENSBTAT00000006826:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF0007617=RRM_1=PD(38.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]