MmuINT0132933 @ mm10
Intron Retention
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60792689-60797742:-
Coord C1 exon
chr2:60797684-60797742
Coord A exon
chr2:60792781-60797683
Coord C2 exon
chr2:60792689-60792780
Length
4903 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GAGTGTCTTTTGCATTTCAGGTT
3' ss Score
9.13
Exon sequences
Seq C1 exon
ATATGGGAAGATCGTGTCCACAAAGGCGATTTTGGATAAGGCCACCAACAAGTGCAAAG
Seq A exon
GTACGGTTCTGTGGGCCGCCTTAGTATACTCAGTCCTGGCTGTAGACGGATGACGCCAAGGCCTTAGGTTTCACAACCAGCCTCATGGTATGAAAAAGCACATCTCACGTGGCGCCCAGTCTCTCTCTTGCACAACGTCTGCATATTGCTTACGTTTGTTTTGTCCCTAGTTGAGTTTTGGCTGGAAACCCATCAACTCCCAGTTTGCCAGAATTCTGGATTTGGCGCCAGTAGAGTTAACACGCAAACTACAAGTTGGCTTTCAGCCCCTGCCTTTAAAGGGGGGAACAGAGCTGGAGAATAGCTTTTCTTTCCTGAGCCTGGGGAGATTAGAGCTGCTTACTGAAGACCATTGGACTGTACTAAAGAACTGAAAAGATTACATATTGTGTAAATTGGCTCTATTAATTAGAATAGAGTAGTTTTAAGCAGTACTTAATTACATGTTTCAATACTCCCGATTGTTCTCTGCTGAATGCCTGTTGACAATATTGGCAGCGGGGAGGAGAGACCCATTTTCACTGACCAAATTGTACCAGGGAGAGGAGGTCATGTGCCCCTTTGAAATCTGCTGCTGCATTAATTTGATGCACTGACCTTCAGTTTTCCATGCAATTAGGATGAGCTCATCCGGCTTCTTGAGCCGGGAGTGCGAGCGGCTGGAGCAGGGCAGCGCAGATGCCGTGCCTCTGACTTTTAATGATCCAGCATCTTCACAATAGGCATGTGATTTCTAGGAAAATGGAAGAATGGAGTCAGCTGACTTTGACTCTAACTACTGACCCTGGGAATTGAAGCAAGGTTGACAGAAATAGGCAGAGAAGGCAAATCTGCTCATTAATTAGACCCTGGCTCTTCAAGTAGTAGTGATGGGGCACTGGCTTAGCATTGAAAAAGGCAGGGAACATAAATGGAGCCTATGGTGAGGCCTCCGCTTGTAAGCCGGTCCTTCCCTTTAATCTAGACTTGAAGTGGTCCATTGTACTCTCTCCTCTTCAAAGTGCCTGGATTTAAAGGAGCTATTGTAGCAAATATCTAAGCCCATGTTTAATCAACATGGCATATTAAGGCAGTTTTGCCTTAGGACAGTGAATAGAGTGTGCTTTATGTAGAACGGTACCCAATAAATATTTAAAATGAATTAAACCGGAGAGAGTCAAATGCGTGCAGAAGTGCATGCACTTAGCTGCCAAGATTAGTCTTACTTAGCATCAATAAATGATTTGGGCAATCAGACACACACACACACACAAAAATACAAACAAGCAAACAAACAAACAAAAAATGTTCTTTGGTTTTATGGAGAAAAATAGGCTCTTGCCAAGCCCAAAGCAGGAAGCTGATCTCACAGTCAACCTCAGACTGGGAGAGAAGTGATAGTGGGTAAATGGCTGTAGCCCACCATATCTCTCTCCCTTTCTTGCTCACCCCAAAGGGATCTGGTGAAACAGCTCAGGATGCTGAAAAGCCAGAGCTGCTGCTGTACGTAGCAAAGAACCCCTCCTCCCAGTTAAACTCTCCAGCACATGCGACACCGAAGGGCACTGCCGTTCTCCTCTCCAATGACTGCTGCTTTCCTAGATTCTGTTCCTTGTTCAGTGTGGTCTAGGCAAGGGCCTGAGTAAAAAGAAATGACAGCTAATCTCACACTACCATACGCAAAGCTGCAGGGTTGGAAAGTGTTCACAGATGAAGTAGAGAGATTAACGGGCCTTCTAAATAAAAGTAAGGGTGATTCAGAATCGACGTTCAATCCAGCAAGTGGCCTGGACACCTTCCTGTTAGCAGGTCTCGGGAGATGCTGCCCTGTATGGGGTCAAACATGATCTCTCCCAAGATTCTCTGTCTCCTAGCCTCTGGGTAGTGTATATCAGCTGTGTAGGGGTGTGGCATGTGCATAAGAGGAGAAGGTGATCCAAGGTGGGTTTCTAAAGCTATGCAGGCCAGGGTGAGTTTGTGAGATGGGGGAGTAATGTTGAGACAAATGGGAAGTAATAGTTTGGTTTGTAATAAAGCCAGATAACATGCTACCCATGGTAACTTGCTATGGTTGGTATAGGTATAAGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGACTATAGATAACTTAGAACATATTATAGAAAATTACTATAAGTGAGAAATACTATGCTATGTATAATTTTTAGAGATTAAATACATTTAAGAAATTTACATATGACACCAAGACATCTTAGAAGGTCAGGAAACTTTCACAAACTTATTTGGGGAAGGCTTCTATTTTGGGTGAAGTTAGGCTAAAGAAAATAACTCTGCTTAAGGTATGTTAGTTATTGACTATTCAGTTGGTATTTTATGTTTCAGTTTTGGTCAAAATTTAGCAAACACGTGGGTTTTAAGTGCTTACCACATAGGCAGGTCACGACAGAGAAACTCACAAAGGATCGACCCGGAAACTGGGTTACAGATGAGAAGAGAGCTCATACATACATTAATTAACACATAAGGAAAAGTGGATGAGGATCAATTAAACTGATAAAGCAAGAGTGGAGACTTCATTTTATCACCAACCACCCTGTGTGTGTGAAAGAAGCCAAGGCAGAAATAGAAAGCACAGCTCTGCCAGTAGCCAGTATCCACAATAGGGGCAGACTTCAGTCAGCAAGATAATCATGACAGTCGGTGATCTTAAGACCTGATGATTTATCTCCTGGAAGCATCAGTGAGCAAATCTGCGTATTACTTAGTAAGCCTCGCCTTCAGAGACAGCGGTACCTGTTTATATAATGAAATTAATTAATCCTGTAGCCCCTGTATAAACTGTCTTTACTTGAAAGTAGCAAGACGAACAGAAAGCACACGGTTGCGCACTTACCCTGTTGTGCTTACCTTCAATAATTATGGATTCTTAAAGTAAGCTTCAGCAAAGACCAGAAACACACACTAGCGATGAGTGAATGCAACAGTTGTGTGTTCCTCTTAAGTCAGTACAAAGAATAACCATTCTGCTATTACATGAACAGAGTGCAACCACAAGTACAATAAATAGCACCACAGAAGAGATGCTCTGCTTTGTGTAGCGTACTGGCAGTGGCAGAGTTGGTGGTAGAGGTGTCCGTCAGTAGGCGCTGCATCGTTTCACAAGAGTGAGGTGTCCCTGTATGATCCCCAGATGTTGTGTTGTATGAGGAAGACAGATACAGAACTTGCCTGACTACCCAGAGAGATGCATATTAGCATAAGCCCCAAACATGTTCAACCTGCCTTCTGACCTGGCAGTTGTGGGTGGCCACTCTGTGCTGTAACTAGGATCAGCTGCCTCCTCTCCCTTCCTAACCTGGCTGTTTCTGTACTGGATAGATCCCATGAAGCTCCTCTCAACCCAGTGCTAAGTAACATAAAGAGCCGCTGCTCAGTGTAGCTTCCGCATCTGTCTCTCCTGAAATAGCCACTTCTGCGGTCGATAGTCTTCCATTACAGCCTACCTCGTGAAGAAGCGACTCTTGAGGCTAGTGCTGCAGCAGCATAGCTGTTGAGTGTTCTGTTTGGCTTCATTGCTGTATACTTGTCCCTCTGATACCAGTAAAACACTCTCAAAACTACTGCTTCTTCATGAATTCTGAATATCAATGCTAAGCCTGGCTCCTCCTATTCACAACCTTCTAAATAGTGCCATTCTTTTTCAAATTATACTCATCAAAATGAATTTTAGAGCCAAGTATGGAGTACTCATGAGGCTGAGGAGCAATTCGGGGCCCCATAGCAAGACCTTGCCGCAAACAAAATTTTCAAAAATTTAAATAAATACATTGCATACATATATACACATATGAACATGCAAGTATAATAGAGATATGTACCTATACAAAAATAAAACGTCATAAGTGACTTGAGTTCAGAGAAAAGCTGATATTTGGGCGAGTCTGCTTCACATTGTACTAAGTATACTTACATGTTCCTCGGTGTGTGAAGAGTTACTGCATGCAGTTTGCTTCTTACCCTGACTGTCCTTCTTGCTAGTCTGCACTGCTAGGTGCCATACATGTGTATATCTTGCAGTCCTGCCCACCTCGGCCCTCTGCCTCCTAATTTCCTGTTTTAATTTATTGTGGCCTGGGAACAGAATTAATAAACTCATTAGCAGTGTTTGTGAAATCACAGGCCAATGAGTTCAGTAGAGTGACCTTTCTGAGGTGGTTCTATGCACCACCACACTGCATACTGTCTTTAGACTCCATGCAGAGATGGGTGGAATAACTGTGCCGGGTATCTTAAGGTATTTTCGTTATCTCCTTTTTGAAAAGAGCTACTGTTATTTTAGGTAAATGAGTACTTTTACCTAGATACTAGAGTTAAGGTTATATTTGAGCATCAAATATTTATACTTATTTTAACTGCTAAATCTAAGGGATAGTCTATAGAATAAATAATGTTTGTTTCTGTCATTTTTCACCTCAGTAAGATAGCTCTATCTTTTTTTGTTGTATTCTTTAAAACTTTGTCTGAAGTTGTCTGTCATTACACCCCTAAGACCCTTTCTTTCTTTTTTTTCTTTATCCTGAAAAGCAACTTAACTGTCAGGTTTTTTCCAATTCTCAGACACCTGAGAAGATCTTTAAGAAGATAAAGCTCAGAGCTACCCCTTTCCCAACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATGAGATGTTTTGAAGGACCTGAGGAAGCCACTTCACCATGGCTGTGGGTACCTATGTGCCTGCAGGACACCTCTGCTTCTGTTGCCTGTATTGGAACCAAAATGAAGTCCTTTTTTTTTTTTCAACACCTTATATAATTAAAAAGTAATGACCTAAGAAGAGTGTCTTTTGCATTTCAG
Seq C2 exon
GTTATGGTTTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAATGGAGTCCAGGCTCAGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970:ENSMUST00000028347:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(30.3=100)
A:
NA
C2:
PF0007617=RRM_1=PD(37.9=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types