HsaINT0138659 @ hg19
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:9907]
Coordinates
chr2:161169667-161174738:-
Coord C1 exon
chr2:161174680-161174738
Coord A exon
chr2:161169759-161174679
Coord C2 exon
chr2:161169667-161169758
Length
4921 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AGTGTGTTTTTGCATTTCAGGTT
3' ss Score
9.95
Exon sequences
Seq C1 exon
ATATGGGAAAATAGTCTCCACAAAGGCAATTTTGGATAAGACAACGAACAAATGCAAAG
Seq A exon
GTATGTTTTCTTGGCTGGTTATTTGGTAAATGATAGCTTTAGAAAAATGATGGAATTTAAAACCTGATCTTTGGTTTCAAAACCACCTTCGTTTTATTAAAAACCAGATCTTATATATCACCCAGTTTCTGTCTTGCACAGTGTCAGCATATTACTTACATTTGTCCCTGGTTGGGTTTTGGCTACAAACCCAACAGCAGCTAGCAGTTTGCCAGAATTCCAGATTTGACGCCAGTAGAGTTAACATGCAAAATACGGGTTGGCATTTAGCCCTTGCTTTTAAAAGGGGAGTAGAGTTAGAAAATAGCTTTTCTTTCCTGAGCCTGAGGAGATTAGAGCTGCTTACTGAAGACCATTGGACTGTACTAAAGAACTGAAAAGATTACATATTGTGCAAATTGGCTCTATTAATTAGAATAGAGTAGTTTTAAGCAGTACTTAATTACATGTTTCAGTACTCCCAATTGTTCTCTGCTGAATGCCTGTTGACAATATTGGCAGCAGGGAGGAGACAACCATTTTCACTGACCAAATTGTAATAGGGAGGGGAGGTCATGCGCCCCTTTGAAATATGCTGCTGCATTAATTTGATGCACTGACCTTCAGTTTTCCATGTAATTAGGATGAGCTCATCCAGCCCCATGAGCTGGAAGAGGAGGCGTCTACAGTAGGCAGCACTGATGCTCTGTGGTTCTGACTTTTAATGATCCAGCATCTTAACAATAGGCATGTGATTTCTAGGAAAAGGGAAGAATAGAGTCAGCTGACTTTGAATCTAACTACTGACCCCATGAATTGAAATAAGTTGACAGGAATAGGCAGAGAAGGCAAATCTCCTCGTTAATTAGACCCCAGTTTTTCAAGTAGTGGTGACGGGGCAGTGGCTTAGCACAATCTGAAAAAGGCAGAGAACATAAATGAACCCTATGGTAGGGGCCTCTCCTTATAAGCCAAGCATTTCCTTTAATCTAGACTTGAAGTGGTTCATTGTATTTCTGTCTCTTCTTCAAAGTGCCTAAATTTAAAGGAGCTATTGTAGCAAATAGCTAAGCTCATGTTTAATCAACATGGCACATTAAGGCAATTTTGCCTTGGGACAGTGAATAGAGCGTGCTTTATGTAGAGTGGTACCCAATAAATATTTTAAATGAATTAAACTAGAGAGAGTCAAATTATAGACTGAAATGCATATACTTAGTTTCCAAGGTTAGTCTTATTTAACATTTATAAATGATTTGGGAGAGCAGAGACACAGAAAAAAAATCTTTTGGTTTTATAAAGAAAAATAGACTCTTGCAGGAATAAAAATAGGAGGCTGATCACCAACATCACTTTGAAACTAGAGAGAAATCAGAGTAGACAAGTGGTTTTATCCATACCCTACCTCCTCTCTTTTTCTTCCCCACCCCAAAAGAAATCTTAATGTCGGCTCAGTGTGTTAAAAAGCAGAGCTGCCCTAATTTAAGTAAAAGAAAGGACCCAGAGGTTGAATGCTTCACCACATCCCTGAACTGAAAACCACACTATTTTACACTCTGCTCCAAAAGCAACCTATTCCATAGAAGCCAAAATTCCTCAAAGTGCTCTACGTGATCTAGAAAAGGTATGGGTAAAAAATAAACTAATGCTAAATCTAACATGTTGTCACAATACAAACCCTTAACAGTTGGTAAGGGTCCATAGTAGAGAGATTTATGGACTTCTAAGGGTAGGACTAATTCAGAACTTATTTTAGATACAAGAAGTCTCCTGGAGACCTTCCTTTAAAGTGGTTTTTGGGAGACACTGCTTTTGGGTGTGTGGGCAGTAATAGAAACCTTCCAGGGCTCTCTGCTTCACACAAGCCTCCCAGCAATAGGTGTCAACAGATATCTGGTGGGTTGAGACGGTGGGTGAGTGAGTGAGTGGAGAGGGTAAGAGTGGGTTTATAAAATCCTAGAAGCAAGAAAAAAGTAATTTCAGGACAAATGAGAAGAAATAACACTTAACTCATGATAAAGTTAGATAACATGTTACCCAAGATAACTTGACGTGATAGGTAGATAGATAGGCATATAGATGACTGATTGATAAATGAATATAAATAAATAAATGCATAAAAGATTATAGAATATTAATATAAATGAAAGGTACTTGTGTTATATACTAATTTTTTGAAATTAAGCAGATCAAAGGACTTTATATATGGGAATGAGAGATCTTAGAGGGTTACAGAACATTTTTTGCCACAAAACATATTTTTGGAACATGTATTTTCAAGAGAATTAAGCTGAAGGAAACATTAGAATAACATGTACCTAAGTTATTAAATTTTAAAATTCACAATTCAGTTGCTATTTTACATTTCAGTTTCTCTCAAAGTTTAGCCAACAAAAGGCATTTATAAGCCCTCCAATGCTGGTAAATATGTCAGTTCAGGACAAAAAGAAAAGCTCACAAAAGATTGGTTATGAAATTGATTGATTCATTATTTATACTTACAGAAGTGCATGTAAGACCAGAATACTTATACACATTAGCAAAAATAGTTTCAGGATGAATTAGACTAACAGGAAAAATAAGGGTAAAAGCAGGCAGCTTTAAGTTATTACCAAATGTCCCTGTGTTTCCTGCTGGCCAAGGCAAAAATAGAAAACATAGCTCGCCCCATGATTCAGTCATCACAATGTGAGAGGAGAGCAGGAGTAACATAACTATTCCTGGTCCTGAAACCTGAGAGGAATTCTCCTGGGAAGCCTCAGTGAGAGGATGCCATGTTATTTAGTGAACCCTGCCTTCAAAAACGTCTTTACACCTATTTATATAATCAAATCCATAGAGTCTGTATAACTCAAATTGTATATTGTCTTCTATTTACTTGAAAGTAATACAGATAGACAGCATGAAAGAGCACAAGGTTGCATACTTAACTATTATGTTTGTCTTCAGCAAATGGTTATAAAACAGCCATAGTGTGGTAGGCATTGGGAAAGGCCAGAAAAGGATGTAAACAGTTAACTAAAATGCAGGCATTATGGATTTCTCTATAAGAAAATAACAGATAACAGAATGCAAATATTACCTGAGTTGATAGTAACTTCAAATACAATAACATCAAAATTGAGATCTTCTGTTTACTGTAATTTGTTGACAATAGCAAAATTGAAGGAAAAAACTTAAATATCCATCAGTAAAAGCTGTATCATTTCATTGTAGCTGGGTTCTCATTTATGACCTGCTGAAACTATATGAGAGAGAGAGAGTTTGTGCATGTACATGCCTGTGTGTGTATCCACAGAGCTTTGTTGCGTGTTAGCATGGACAACAGATGTCTAAAAAAACATCCAAGATATGTTTAACCTTATTTCTAACCTGGTAGTTGAGTATCATTCTTTGTTTTACCTAGATCAACCTCTTCCTTTTGCTCTCCAGCCTGGCTATTTCTCTACTGTCTAAATCAAATTAAGCCTTATTTCAGCCCAATTCCAAGTAATATATAAGGAAGCCGCTTCTTGTTTCAGCTTTAACATTCATCTCTCCTGAAACATCTATTTCTGTAGTCAATAGTCTGCTCCATCTCATTATAACTTATTTCGTTACCAGGCAATATTTTTGGTACTAATACTGCAAAACTGACTTTGGGCTGTTTCTGAGCTTTCTGTTTGACTTTATTGATGTTGATTTTGTCACTAGTATCATACTATCTAAATTACTACTAATTTAGATAGAAATATTACTTAGTAATATTTCTGTAAGTAAATGATAGGGCTAGCTCCTCTTCTAAACAACCTTCCAATGATGCTTTTCTTTTGCAAAGTATTCTTATTCATTTACAATTAGTTTGAGTTCCATGGAAGGCTCTGGTATTTTGCCTGGTACCGTTTCGTTAGTCTACTAAATATAACTTGACCCTTTTCTCAATAACTTAAGAATTATCACAGTGAAAAGTCTGTGATTCTCTATTTTGATACGGTGATACTCATGGGATCTGTTGAGATTCATGAGGCTGTTAGTGCTTATGCTGTGTAAGTCCTATTCTTTGCATAGTTTTTCTCTTTTATTGCTTGTTAGTAGTTTTGACTGTTAGATGCCATTCATATACTTACTTTGTAGCAGACCTGCCATCACCCCAGCCCCCCTTTTCCCCTAATTTTCTGCTTTTGACTTGTTGTGGCCTGGGAAGACAGATGACCAGCTCATTAAAAATGTTTGTAAAGCTATGGATAAGGAAACTTTGAACCAGAGCATCTCTAAGGAGGTTATGTGTTTGTTTTGTTATGTTTTGTTTTTAGACTTTAGAACATGAACTGCCAAAACATATTTTAGGTGTCTTGAGGCATTTTCCCCAGCTCTTCTTTATTTTGAAGGGGTGTGATGAGCTGTATTTTAAGAAAATAAATATGATATCTTTAACTGAGTACTAAACTTTAGATTATTTTATATTGGGGGTGTCTAATAGTTGTACTTATTCAAATTTTTAAAAATACAAGTTTATCTACAAAATAAACATAATTTTTGTTTCTGTCATTTGTAAACTCTGTAGGATGTCTCCATCTTTCTTACCGAATCATTAAAATGCTATTTCCCTGAAGTTGATTATTTTTTTTCTTCCTTTTTTTTTAAATTTCTTTTTTTTAAACTTGGTTGGCAACTTAGATGTCTCCCCCCCACCAGTAAATACAAGACACGTAAGATCTTGAATAGGGAAACGCTGGTTCTTTACTCCCCCAACTCCCTCTGAAGGCAGGCTTGTCTGTCTGGTGATAGACGACAGGGAAGAAGGGCCCAGGAGGCCACTGGCCTGCAGCTGTTAACGCCTGAGCTCCCTCAGGACATTTTCATGTCTCTTGCCCACACCAGAAACAAAGTAGAGCTGTTCTTTTACCCTTTTACCTAACCACAGAATAATGGCTTAAATACTAAGTGTGTTTTTGCATTTCAG
Seq C2 exon
GTTATGGTTTTGTCGACTTTGACAGCCCTGCAGCAGCTCAAAAAGCTGTGTCTGCCCTGAAGGCCAGTGGGGTTCAAGCTCAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-RBMS1:NM_016836:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.295
Domain overlap (PFAM):
C1:
PF062597=Abhydrolase_8=FE(17.5=100),PF0007617=RRM_1=FE(29.4=100)
A:
NA
C2:
PF062597=Abhydrolase_8=FE(26.3=100),PF0007617=RRM_1=PD(39.7=87.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)