HsaINT1028995 @ hg38
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160313156-160318227:-
Coord C1 exon
chr2:160318169-160318227
Coord A exon
chr2:160313248-160318168
Coord C2 exon
chr2:160313156-160313247
Length
4921 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AGTGTGTTTTTGCATTTCAGGTT
3' ss Score
9.95
Exon sequences
Seq C1 exon
ATATGGGAAAATAGTCTCCACAAAGGCAATTTTGGATAAGACAACGAACAAATGCAAAG
Seq A exon
GTATGTTTTCTTGGCTGGTTATTTGGTAAATGATAGCTTTAGAAAAATGATGGAATTTAAAACCTGATCTTTGGTTTCAAAACCACCTTCGTTTTATTAAAAACCAGATCTTATATATCACCCAGTTTCTGTCTTGCACAGTGTCAGCATATTACTTACATTTGTCCCTGGTTGGGTTTTGGCTACAAACCCAACAGCAGCTAGCAGTTTGCCAGAATTCCAGATTTGACGCCAGTAGAGTTAACATGCAAAATACGGGTTGGCATTTAGCCCTTGCTTTTAAAAGGGGAGTAGAGTTAGAAAATAGCTTTTCTTTCCTGAGCCTGAGGAGATTAGAGCTGCTTACTGAAGACCATTGGACTGTACTAAAGAACTGAAAAGATTACATATTGTGCAAATTGGCTCTATTAATTAGAATAGAGTAGTTTTAAGCAGTACTTAATTACATGTTTCAGTACTCCCAATTGTTCTCTGCTGAATGCCTGTTGACAATATTGGCAGCAGGGAGGAGACAACCATTTTCACTGACCAAATTGTAATAGGGAGGGGAGGTCATGCGCCCCTTTGAAATATGCTGCTGCATTAATTTGATGCACTGACCTTCAGTTTTCCATGTAATTAGGATGAGCTCATCCAGCCCCATGAGCTGGAAGAGGAGGCGTCTACAGTAGGCAGCACTGATGCTCTGTGGTTCTGACTTTTAATGATCCAGCATCTTAACAATAGGCATGTGATTTCTAGGAAAAGGGAAGAATAGAGTCAGCTGACTTTGAATCTAACTACTGACCCCATGAATTGAAATAAGTTGACAGGAATAGGCAGAGAAGGCAAATCTCCTCGTTAATTAGACCCCAGTTTTTCAAGTAGTGGTGACGGGGCAGTGGCTTAGCACAATCTGAAAAAGGCAGAGAACATAAATGAACCCTATGGTAGGGGCCTCTCCTTATAAGCCAAGCATTTCCTTTAATCTAGACTTGAAGTGGTTCATTGTATTTCTGTCTCTTCTTCAAAGTGCCTAAATTTAAAGGAGCTATTGTAGCAAATAGCTAAGCTCATGTTTAATCAACATGGCACATTAAGGCAATTTTGCCTTGGGACAGTGAATAGAGCGTGCTTTATGTAGAGTGGTACCCAATAAATATTTTAAATGAATTAAACTAGAGAGAGTCAAATTATAGACTGAAATGCATATACTTAGTTTCCAAGGTTAGTCTTATTTAACATTTATAAATGATTTGGGAGAGCAGAGACACAGAAAAAAAATCTTTTGGTTTTATAAAGAAAAATAGACTCTTGCAGGAATAAAAATAGGAGGCTGATCACCAACATCACTTTGAAACTAGAGAGAAATCAGAGTAGACAAGTGGTTTTATCCATACCCTACCTCCTCTCTTTTTCTTCCCCACCCCAAAAGAAATCTTAATGTCGGCTCAGTGTGTTAAAAAGCAGAGCTGCCCTAATTTAAGTAAAAGAAAGGACCCAGAGGTTGAATGCTTCACCACATCCCTGAACTGAAAACCACACTATTTTACACTCTGCTCCAAAAGCAACCTATTCCATAGAAGCCAAAATTCCTCAAAGTGCTCTACGTGATCTAGAAAAGGTATGGGTAAAAAATAAACTAATGCTAAATCTAACATGTTGTCACAATACAAACCCTTAACAGTTGGTAAGGGTCCATAGTAGAGAGATTTATGGACTTCTAAGGGTAGGACTAATTCAGAACTTATTTTAGATACAAGAAGTCTCCTGGAGACCTTCCTTTAAAGTGGTTTTTGGGAGACACTGCTTTTGGGTGTGTGGGCAGTAATAGAAACCTTCCAGGGCTCTCTGCTTCACACAAGCCTCCCAGCAATAGGTGTCAACAGATATCTGGTGGGTTGAGACGGTGGGTGAGTGAGTGAGTGGAGAGGGTAAGAGTGGGTTTATAAAATCCTAGAAGCAAGAAAAAAGTAATTTCAGGACAAATGAGAAGAAATAACACTTAACTCATGATAAAGTTAGATAACATGTTACCCAAGATAACTTGACGTGATAGGTAGATAGATAGGCATATAGATGACTGATTGATAAATGAATATAAATAAATAAATGCATAAAAGATTATAGAATATTAATATAAATGAAAGGTACTTGTGTTATATACTAATTTTTTGAAATTAAGCAGATCAAAGGACTTTATATATGGGAATGAGAGATCTTAGAGGGTTACAGAACATTTTTTGCCACAAAACATATTTTTGGAACATGTATTTTCAAGAGAATTAAGCTGAAGGAAACATTAGAATAACATGTACCTAAGTTATTAAATTTTAAAATTCACAATTCAGTTGCTATTTTACATTTCAGTTTCTCTCAAAGTTTAGCCAACAAAAGGCATTTATAAGCCCTCCAATGCTGGTAAATATGTCAGTTCAGGACAAAAAGAAAAGCTCACAAAAGATTGGTTATGAAATTGATTGATTCATTATTTATACTTACAGAAGTGCATGTAAGACCAGAATACTTATACACATTAGCAAAAATAGTTTCAGGATGAATTAGACTAACAGGAAAAATAAGGGTAAAAGCAGGCAGCTTTAAGTTATTACCAAATGTCCCTGTGTTTCCTGCTGGCCAAGGCAAAAATAGAAAACATAGCTCGCCCCATGATTCAGTCATCACAATGTGAGAGGAGAGCAGGAGTAACATAACTATTCCTGGTCCTGAAACCTGAGAGGAATTCTCCTGGGAAGCCTCAGTGAGAGGATGCCATGTTATTTAGTGAACCCTGCCTTCAAAAACGTCTTTACACCTATTTATATAATCAAATCCATAGAGTCTGTATAACTCAAATTGTATATTGTCTTCTATTTACTTGAAAGTAATACAGATAGACAGCATGAAAGAGCACAAGGTTGCATACTTAACTATTATGTTTGTCTTCAGCAAATGGTTATAAAACAGCCATAGTGTGGTAGGCATTGGGAAAGGCCAGAAAAGGATGTAAACAGTTAACTAAAATGCAGGCATTATGGATTTCTCTATAAGAAAATAACAGATAACAGAATGCAAATATTACCTGAGTTGATAGTAACTTCAAATACAATAACATCAAAATTGAGATCTTCTGTTTACTGTAATTTGTTGACAATAGCAAAATTGAAGGAAAAAACTTAAATATCCATCAGTAAAAGCTGTATCATTTCATTGTAGCTGGGTTCTCATTTATGACCTGCTGAAACTATATGAGAGAGAGAGAGTTTGTGCATGTACATGCCTGTGTGTGTATCCACAGAGCTTTGTTGCGTGTTAGCATGGACAACAGATGTCTAAAAAAACATCCAAGATATGTTTAACCTTATTTCTAACCTGGTAGTTGAGTATCATTCTTTGTTTTACCTAGATCAACCTCTTCCTTTTGCTCTCCAGCCTGGCTATTTCTCTACTGTCTAAATCAAATTAAGCCTTATTTCAGCCCAATTCCAAGTAATATATAAGGAAGCCGCTTCTTGTTTCAGCTTTAACATTCATCTCTCCTGAAACATCTATTTCTGTAGTCAATAGTCTGCTCCATCTCATTATAACTTATTTCGTTACCAGGCAATATTTTTGGTACTAATACTGCAAAACTGACTTTGGGCTGTTTCTGAGCTTTCTGTTTGACTTTATTGATGTTGATTTTGTCACTAGTATCATACTATCTAAATTACTACTAATTTAGATAGAAATATTACTTAGTAATATTTCTGTAAGTAAATGATAGGGCTAGCTCCTCTTCTAAACAACCTTCCAATGATGCTTTTCTTTTGCAAAGTATTCTTATTCATTTACAATTAGTTTGAGTTCCATGGAAGGCTCTGGTATTTTGCCTGGTACCGTTTCGTTAGTCTACTAAATATAACTTGACCCTTTTCTCAATAACTTAAGAATTATCACAGTGAAAAGTCTGTGATTCTCTATTTTGATACGGTGATACTCATGGGATCTGTTGAGATTCATGAGGCTGTTAGTGCTTATGCTGTGTAAGTCCTATTCTTTGCATAGTTTTTCTCTTTTATTGCTTGTTAGTAGTTTTGACTGTTAGATGCCATTCATATACTTACTTTGTAGCAGACCTGCCATCACCCCAGCCCCCCTTTTCCCCTAATTTTCTGCTTTTGACTTGTTGTGGCCTGGGAAGACAGATGACCAGCTCATTAAAAATGTTTGTAAAGCTATGGATAAGGAAACTTTGAACCAGAGCATCTCTAAGGAGGTTATGTGTTTGTTTTGTTATGTTTTGTTTTTAGACTTTAGAACATGAACTGCCAAAACATATTTTAGGTGTCTTGAGGCATTTTCCCCAGCTCTTCTTTATTTTGAAGGGGTGTGATGAGCTGTATTTTAAGAAAATAAATATGATATCTTTAACTGAGTACTAAACTTTAGATTATTTTATATTGGGGGTGTCTAATAGTTGTACTTATTCAAATTTTTAAAAATACAAGTTTATCTACAAAATAAACATAATTTTTGTTTCTGTCATTTGTAAACTCTGTAGGATGTCTCCATCTTTCTTACCGAATCATTAAAATGCTATTTCCCTGAAGTTGATTATTTTTTTTCTTCCTTTTTTTTTAAATTTCTTTTTTTTAAACTTGGTTGGCAACTTAGATGTCTCCCCCCCACCAGTAAATACAAGACACGTAAGATCTTGAATAGGGAAACGCTGGTTCTTTACTCCCCCAACTCCCTCTGAAGGCAGGCTTGTCTGTCTGGTGATAGACGACAGGGAAGAAGGGCCCAGGAGGCCACTGGCCTGCAGCTGTTAACGCCTGAGCTCCCTCAGGACATTTTCATGTCTCTTGCCCACACCAGAAACAAAGTAGAGCTGTTCTTTTACCCTTTTACCTAACCACAGAATAATGGCTTAAATACTAAGTGTGTTTTTGCATTTCAG
Seq C2 exon
GTTATGGTTTTGTCGACTTTGACAGCCCTGCAGCAGCTCAAAAAGCTGTGTCTGCCCTGAAGGCCAGTGGGGTTCAAGCTCAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250:ENST00000348849:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.294
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF0007617=RRM_1=PD(38.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains