RnoINT0125313 @ rn6
Intron Retention
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46842330-46847426:-
Coord C1 exon
chr3:46847368-46847426
Coord A exon
chr3:46842422-46847367
Coord C2 exon
chr3:46842330-46842421
Length
4946 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
GAGTGTCTTTTGCATTTCAGGTT
3' ss Score
9.13
Exon sequences
Seq C1 exon
ATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAACCAACAAGTGCAAAG
Seq A exon
GTACGTTCCTGTGGGCCTCTGTGTACTCACTCATGGCTGTAGAAAGACCGTGCAACAGCCCTAGGTTTCACAACCTCACGGTCTGAAAAAGCCACATCTCCTGCGGCACCCGGTCTCTCTCTTGCACAATGTCTGCATATTGCTTACGTTTGTTTGTCCCGGGTTGAATTTTGGCTGGAAACCCAGCAACCCGCAGTTTGCCAGCATTCAGGATTTGGCGCCAGTAGAGTTAACATGCAAACTACGAATTGGCTTTCAGCCCCTGCCTTTAAAAGGGGGAGCAGGACTGGAGAATAGCTTTTCTTTCCTGAGCCCGAGGAGATTAGAGCTGCTTACTGAAGACCGTTGGACTGTACTAAAGAACTGAAAAGATTACATATTGTGTAAATTGGCTCTATTAATTAGAATAGAGTAGTTTTAAGCAGTACTTAATTACATGTTTCAATACTCCCGATTGTTCTCTGCTGAATGCCTGTTGACAATATTGGCAGCAGGGAGGAGAGAGCCATTTTCACTGACCAAATTGTACCGGGGAGAGGAGGTCATGTGCCCCTTTGAAATATGCTGCTGCATTAATTTGATGCACTGACCTTCAGTTTTCCATGCAATTAGGATGAGCTCATCCGGCTCCTTGAGCTGGGAGTGCAAGCGGCTGGAGCAGGGCAGCGCAGATGCTGTGTGCCTCTGACTTTTAATGATCCAGCATCTTAACAATAGGCATGTGATTTCTAGGAAAATGGAAGAATGGAGTCAGCTGACTTTGAATCTAACTACTGACCCTGGGAATTGAAGCAAGGTTGACAGAAATAGGCAGAGAAGGCAAATCTGCTCGTTAATTAGACCCTAGTTCTTCAAGTAGTGGTGATGGGGCATTGGCTTAGCAATGAAAAAGGCAGGGAACATAAATGGGGCCTATGGTGAGGCCTCCGCTTGTAAGCCGGTCCTTCCCTTTAATCTAGACTTGAAGTGGTCCATTGTACTCTCTCCTCTTCAAAGTGCCTGGATTTAAAGGAGCTATTGTGGCAAATATCTAAGCCCATGTTTAATCAACATGGCATATTAAGGCAGTTTTGCCTTAGGATAGTGAATAGAGTGCGCTTTATGTAGAACGGTACCCAATAAATATTTAAAATGAATTAAACCAGAGAGAGTCAAATGCGTGCGGAAGTGCATGCACTTAGCTGCCAAGATTAAGCTTCCTTAACATCAATAAATGACTTGGACAATCAGGGAGACACACACACAAATATAAACAACAAACAAACAAACAAAAATGTCCTTCGGTTTTATGGAGAAAAACAGGCTCTTGCTAACCCCAAAGCAGGAAGCTGATCTCAAAGTGAGCCTGAAACTGGGAAAAAAATAAACAGTGGATAAATGGTTTTAGCCTGTCATACCTCTCCCCCCTTCTTCCTCACCCAAAAGGAATCTGATGTAGCGGTTCAGGATGCTGAAAAGTGAGAGCTGCCGCCATGAGTAGCAAAGAACCCCTCCTCCTAGTTAAACTCTCCATCCAGCACATGCTACACTGAAGGACACTGCTCTTCTCTTCTCCCATGGCTGCTGTTTTCCTAGAAGCCAAAATTCTACCCCATGCTCAGTGTGGTCTAGGCAAGGGCATGAGTAAAAAGAAATGACAGCTAATCCCACGCTACCATATGCAACGCTGCATGATTGGAAAGTGTCCATAGATAAAGTAGAGAGATTAATGAGGCTTCTAAAGAAAGGTAAAGGTGATTCAGAACTGACATTCAATCCAGCAAGTGGCCTGGACACCTTCCCGTCAGCAGGTTTTGGGAGACGCTGCCCTGTGTGGGGCCAAGCATGATCCCACCCACAATTCTCAGTGTCACTAGCCTCTGGGCAGTGTACATAGGCTACATAGGGGTGTGGCATATGGATAAGAGGAGAAGGTGATCCAGAGTGGGTTTGTAAAGTCATGTAGGCCAGGATGAGTTTGTGGGATGGGGGGAGTAATGTTGAGACAAATGAAAAGTAACAGTTCGGTTCATAAGAAAGCCAGACAACGTGCTACCCATGGTAACTTGCTATGGTTAGTATATATATATATAAATATATATATATATATATATATATATATATGTATGTATCTGTGTGTGTGTGTGGTTTTTTTCACTTATAGTTATGGTGAATATAGATAACTTAGACCGTAAGAGATTATAGAAAATTACTTTAAGTGAGAAATACTATATTAAATATAACTTTTAGAGATTAAATATATTCAAGAAATTCACACATGACACCAAGACTTCTGTTTTGGATGAAATTAAGCTAAAAGAAAATATTAAGTCTGCTTAAGGTATGTTAGCCGCTGAAGATTCGGTTGGTATTCTGTATTTTAGTTTTGGTCAGAATTTGGCAGCAGACGTGTGGGTTTTAAGTGCTTACCACGTAGGCAGGGCAGGACAAGAACACTCACCAAGGATGCACCAGGAAACTGGGTTACAGAGAAGAGGAGAGCACATGCATACATTAGCACATAAGGAAAGGGGGTGCAGATCGATTCGGCTGATAGATAGAGCGAGGGCAGAGACGTTCATTTTATCACCAACAAGCCTGGGTCTGAAAGAAGCCAAGGCAGAAAGGGAAAACACAGCTGTGCTGTATCCAGCCATCTCACAGTGGGGCTGGCTTCAGTAAGCAAGGTAAACATGACTGTTGGTCTCTTAAGTCCTGATGGTTTATCTCCTTGGAGCTCAGTGAGCAAATCTGCGTGTTACTTAGTAAGCCCCACCTTCAAAGACAGCGGTAGCCCTGTTTATATAAAGAAGCCTAATTGGTCCTCCAGCCCCTATATAAACTTTTAAAGGTCTTTACCTGAAAGCACAGGTGAAGGGAAAGCCCACAGTTGCGTGCTTACCTGTTGTGCTTGCCTTCAGTAAGTAGTTATGAATTCTTACTGTAGGTTTCAGCAAAGACCAGAAGCACACACTAGTAATGGCGGGATGATGTGTTTTTACTGAGTCAGTAGAAAGAACGGCTCTATGACATGAGCAGATTGCAACCTCGGGTACAAGGAACAGCATCAGAGGAGAGATGCTCCGCTTATCGTGCTGTGTTGGCTTTGGCAGAGCTGGTGGAAGAAGTGTCCATCAGCAGGAGCTGCATCAGTTCAGTAGAGCAGGGCGTCCGCTTAGGATCCCCCGATACCGTGTCGTTTGAGAGACAGATGCAGAGCTCACCAGATGCAGAGCTCACCTGATTGTGCCCAGAGCAATGCCTGTCAGCGTAAGCTCCAAACATGTGCAACCTGCCCTCTGAGCTAGCAGTTGGGGGCACTCTGTGCTGTAACGAGGATCAGCTGCCTCCTCTCCCTTCCCGCCGACCTGGCTATTTCTGTCCTGGATAAATCAAATCAAGCCCCTCTCAACCCAGTTCTAAGCAATGTAAAGGAGCCTCTGCTTGCCGCATCGGTCTCTCCTGAAACAGCCACTTCTGGAATCGATAGTCTTCCATTACAGCTTATCTCGTGAAGAAGTACCTTTTGAGGCCAGTGCCGCAGCATGGCCGATGAGTGTTCTGTTTGGCTTCATTGCTGAATGCTTGTTTCTCTGATACCAGCACAACATTCTCAAAACTACTGTTTCTCTATAAATTCTGAATATCAATGGTTGGCCTGGCTCCTCCTCTTCACAACCTTCTAGATAGTGCCATTCCTTTTCAAGTTATACTTATTTAAAGAAAAAAAAAATTTTAGAGCCAGGCATGGAGTGTTCATGTACTCATGAGGCTGAGGAGCAACGCAGGTCCAAGGTAGCCTGGGCCACATAGCAAGACCTTGCCTCAAACAAAGGTTTCAAAAATGTAAACGAATGCACTACATGTATGTCTACATAGATATGCGTACAAGCATAATAGAGATATGACCTCTACAAAAATAAAACTTCATGAGTGATGTGAGTTCAGAAAAATAGCTGAAATGTGGGCAAGTCTCCTTCAAATAGTATTAGATATGCTTACATGCTCCTCAGTATGTCAAGAGTTGCTACATGCAATGAAAACGGAGTGTCTGTGTGACATATGTATGAGAGGCTCGGGCTCTTTGCCCCTTACTGTGGCTGTCCTCCCTGGCCTGCACCACCAGGTGCCGTGCATGTATACATTTTACAGTCCTGCCCACCTCAGCCCTCTGCCCCCTAATTTCCTGTTTTGATTCATTGTGGCCTGGGCACGGAGATAATAAGCTCATTAACAGTGTTTGTGAGACCACAGGCAGATGAGCTCGGTAGAGCGGCCTTTCCTAGGTGTTTATGTGTATCCTTGTAGTGCATACCAACCTTACACTTTACACGGAGATGGGCGAAGTGACTAGTTTAGGTGTCTTGAGGTATTTTCACTATCTCCTGTTACTTTAGGTAAATGAATACTTTTAACTAGGTACTAAAATTTAGATTATATTTAAATATCAAATGTTTATACTTATTTTAACTGCTAAAACTAAGGGATCATCTCTAGACGTTTGTTTCTCTCATTTTTTTTTAGCTCCATCAGATAGCTCTGTCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTATTCTTTAAAAATTGGCTGAAGTTGTCTGTCACCCCTGACACATCTCCTTTTCTCCCCCTGAAAAGCAACTTAAATGTCAGGTTTTTTCCAACTATCACACACCTTAGAAGATCTTTAAGAAAACAGAGCTCAAAGCCACCCTTCCCGTACACACGTACACACTGGTGCATGCACACACACACACACACACACACACACACACACTTTTAAGAGGTGTTTTGAAGGACCCGAGGAAGCCACTGCAACATGGCTGTGGGTACCTATGTGCCCACAGGACACCTCTGCTTCTGTTGCCTATATTAGAACCAAAATGAAGTCTTTTTTAAATTTTTTTAAACACCTTATGTAATTAAGAAGTAATGACCTAAGAAGAGTGTCTTTTGCATTTCAG
Seq C2 exon
GTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482:ENSRNOT00000011682:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF0007617=RRM_1=PD(38.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]