BtaINT0123468 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57182769-57183758:-
Coord C1 exon
chr5:57183700-57183758
Coord A exon
chr5:57182861-57183699
Coord C2 exon
chr5:57182769-57182860
Length
839 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACTCTGTTTCCCTGTTCCAGGCT
3' ss Score
10.35
Exon sequences
Seq C1 exon
ATACGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
Seq A exon
GTGAGAGTACAGCTATTCCTGCTGGTGGAGAAGAGCTGCAGGTGAGGCCCTCGCTTGCCTCCATCCCTCCCTGCTTCAGGCCCCTGGTTTCCACTACCAGGGTGGCGTCTCTCAGGGGTTCAGGCTTGAAAGTCAGGTAGGTATGTAAATTCTTTGGTGACCAGAGAGTTTGAGCTAAAAGTGCTGTTTGGGGGACCCAAGGCTAGAATCCTGCACAGAGCGCCTTTGAGTCCTTTGACCGCGCCTTTGTGTCATGCTCCCCTGGATTGGATGGTAGATACGAGCACGTGAGACTATTTCTACTTAGCAGAGCACTGTAAATGTCTTGTGTTGGTGTACATAGGGCAGCTTAATTTTGTTGGGGTTTTGAGCAGCTCTAGGTGGAGAGGGAAAGAGGGAAGGGGCTGGACGCTGGGGTGAGGAGGGGCTTCTTACAGCAGGTGGCTGGCTATCTGCAGTGGAGAGGCTGTATTTCCTACATGCCTAGCATTTCTGGGATGTGACTAGAAAAGAGGAGGGAGTTCTTTTGGAAATAGAGGGGGGCCGTGAGTTACTAGAGGAGCCTAGTTGTTGAAACCTTGGGTTTTTCTTAGGCGAGAGGGAGGAAGGCAAGGATACCACAAAGACCTCATGGCCCTTGGCATTCTTAGCTATAAAGTAGACCAAATCTCACAGGGTTTGGGGAGCCCATGGAAAACCACCTGAAGCCTCTTAATCTCTCTTCCTCCCTGCCACTTCTATTATGTGGGTCGAAACTCTTCCTCTGTTTCCTGAAAAGCCGGGGTCTCCTACCTCCCTTACACCTCCTGCCTCCCAGTGACTCTGTTTCCCTGTTCCAG
Seq C2 exon
GCTATGGCTTTGTGGACTTCGACAGTCCTTCAGCAGCACAGAAAGCAGTTACAGCACTGAAGGCCAGTGGTGTACAAGCGCAGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830:ENSBTAT00000023705:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF062597=Abhydrolase_8=FE(18.2=100),PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF062597=Abhydrolase_8=FE(27.3=100),PF0007617=RRM_1=PD(38.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]