RnoINT0125324 @ rn6
Intron Retention
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2566239-2567090:-
Coord C1 exon
chr7:2567032-2567090
Coord A exon
chr7:2566331-2567031
Coord C2 exon
chr7:2566239-2566330
Length
701 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGACACTCTTTCCCCTCCAGGCT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTATGGCAAGATTGTCTCCACCAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
Seq A exon
GTGAGAGAGAACAGCTGTCCTCTGGGAGTCCGGGCAGTCGGCGCTGGGAGGAGCTGGGAGGTTTGGGGCCTAAAGACCTATAGGCTGTTTAGACTCATTGGTGAGGAGAGAGAGCTGCTGCTGAGGATGCTGGCAGGAGACTGTGGCCTCCCTTGCCCTGAGTGTGTTCTGCTCCCTGTGGGTCAAGGGTCTTCCTGGGTGGGAAGGTGTACAGGGAGAAGTTTCTAATCCTCTATGTAAACACTTTTTCAGGGAGTTGGGAGGACAGCCCAGGAGGTGGGTTTTTTTTTTCAATGCTGAATGGTTGTGGAGGGGTTTGAACATTTCTGAGGAAGGACTGCTTCCGTCTGGTGTCTGCTTGCTCTGCTGTATTCCTCCCTCCCTGGAGTTTCCGGGGCCTGTCTGGAGAAGAGATGGAAGCCTTTAGCATGAAGTCTGGGATTTAATACTTCAGGTCTGAAGCTCTAGGTTCTTAATGAGAGGAAAGGCAGAATACCGCAAGGTTTTCTCATTTCCCTGGGCAGCCACAGAGAGGGCCTGAGCTCTGGTGAGGGTCACATGGACAGTCACCTGAAACTCCCAATCTCTCTTTCCCCTGCTACATCATTTACATGGAACATAACTCTTCTCTGTCTCCTGAAAAGCCTGGGCCTCCCACCTCTCTCATACCTCCCACTCCCATGACACTCTTTCCCCTCCAG
Seq C2 exon
GCTATGGCTTCGTGGACTTCGACAGTCCGTCATCAGCACAGAAGGCTGTAACTGCACTGAAAGCCAGTGGTGTGCAGGCACAAATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076:ENSRNOT00000048848:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.339
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF0007617=RRM_1=PD(38.8=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]