DreINT0128110 @ danRer10
Intron Retention
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:1059049-1061245:-
Coord C1 exon
chr20:1060993-1061245
Coord A exon
chr20:1059159-1060992
Coord C2 exon
chr20:1059049-1059158
Length
1834 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TGTGTGTGTGTGTGTTTCAGGGC
3' ss Score
12.81
Exon sequences
Seq C1 exon
CATCGAGGCGGCTGTGGCAGCGTTCGCTCAGGCTCGTCCGCCAGGCATCTATAAAGGAGACTACCTGAAGGAGCTCTTCCGGCGGTACGGGGATGTGGAGGACGCTCCCGCCGCCCCGCCACTGCCCGAGTGGTGCTTCGATGAAGACGAGGAGGAGGATGGGGAGGAAGACGGCAGTGCCAGCGCTCCGGCCTCCGAGCCCAGCTCATCTCACACCGGGCAGAGCAAGAAGAAGAAGGAGAGACTCAAACTG
Seq A exon
GTGAGATGCGTTTGAAAAAGAAGCGTTACAAGGAAATTTTCACAGTATTTCCTCTAATATTTGTTCTTCTGGAGAAAGTCTTATTGGTTTTTTTTCCGGCTAGAATAAAAGCAGTTTTTATTGTTTTAAACCATTTTAAGGTCAATGTTATTAGCCCCCTTAAGCAATATTAGTTTTGGATTGTCTACAGCAGGGGTTCCCAAAGTAGGGCTCGGGACCCCCCCGGGGGGGTCGTGGGACATTTTAATAAATTCATTCATTCATTTTATGAAACTTTTGCTCTTACCATATTTTATCCATAACCTACAGAAGCAAAACAGTGTACATTTTTTTGCGACCTCTGGGGTGTGCACATTATATGTTTCTTTATTTAACCAGATAAAAACCCATTGAGATCAAGATCTCATTTACAAGGGTGACCTGGCCAAGAGGTCTGCAACACACGATTTATATAAAAAAAATAAAAATAAAAATTTAATAATATTAGTAATAAATATAAAATTAATATAATATAAAAATACAGTTCAGTTTTCCCGCTTTACCACATTGCAATATATTAAAAACACATACATTGAGAAATGGACTGTTGTTGCTTGTTAAAAAGGATAGAGCGAAACGATGTCATTGGGATGAGCTCAGATATCTTTAGTTCAGACTGAAGAGTATTCCAGGATGAGCGGGCGGCATGACTAAAGGCTCGCTTCCCGATTTCAGTTCCAACCCGGGGAACAGTCAAATGATAAGCTTCACTTGAGCGTAGGGCATACTGGCTTTTAGACTTATGGAGAAGGGAACATAGGTATGAAGGCACCAGTCCCAGAAGAGCCTTGTAGACCAGAGTCATCCAATGGGTGTACCTTCTTACATACAGAGAAGGCCACTCAGCTTTGGCATACAATTCACAATGCCAAGCCTGTAACAATCCTTAGAGCACTGTGATAGATAGAGTAAAGGCTGAAGACATTTGTTTGAAGCATGCATATAAAAAACATCACCATAGTCAATCAAGGGTAAAAATGTTGCAGACACCAAATGTTTGCGAGCTTTAAGAGAAAAGCAGGATGCATTTCGATAGTAAAATCCGAGCTTAACTCTCAATTTCCTAACCAAATTTGCTGTGTGTTCTTTGAAAGAAAGCTCCTGATCGAGTAGAAAGCCTAAATACTTATAGCGGGACACTAAATTTTAAATGAATTAAAATACATTGAGACAGCACATTGATATTATGGCAGCAGGTTAAACTTTCTGATACCTTTACGGCACTCGTGTACATCAATATTCAATACAGGCCACAACTGAGCATGAAGGATGGTCTCAGAGTGGCGTTTAAACAATGAATAGACCTGGCCCTATTGGTATGTGTGCGCCTGTGTGTAAGGTTTATATATTTATAACCATCTCAGAGGATATTGGGGGTCACGAGTCACTGGCATTGTTATTTATTTATACAATGACTTGCCTAATTACCCTAACTTTACCCTAATTACCCTAGTGAAGCCTTTAAATGTGACTTTAAGCTGAATACTAGTGTCTTGAAGAATATCTAGTCTAATATTATTGACTGTCATCATGACAAAGAGAAAATAAATCAGTTATTAGAGATGAGTTATTAACACTATCATGATTAGACATGTGTTGAAATAATCTGCTCTCTGTTAAACAGAAATTAGGGGAAAATAAACAGGGGGGCGAATAATTCTGACTTCAACTGTTTATATCTCAGAAAAACAAAATCTCCCAACTTCACAGATAAGGATAAGGCTCATGACTGGGAGTGTATCAGCTGTCTTGTGAGCTGGAGTGATGGTTTGAGGTGTGTGTGTGTGTGTTTCAG
Seq C2 exon
GGCGCTGTGTTTCTGGAAGGCGTCTCTGTCAAAGGAGTCTCTCAAGTCACAACACAGCCCAAACTCGGAGAAATCCAGAGGAAGTGCCAGCAGTTCTCAGAGTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261:ENSDART00000040680:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PD(23.3=36.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCGCTCAGGCTCGTC
R:
TGTCCCACTCTGAGAACTGCT
Band lengths:
342-2176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]