DreINT0129320 @ danRer10
Intron Retention
Gene
ENSDARG00000042652 | rreb1b
Description
ras responsive element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-070912-273]
Coordinates
chr2:21394831-21395275:+
Coord C1 exon
chr2:21394831-21394973
Coord A exon
chr2:21394974-21395085
Coord C2 exon
chr2:21395086-21395275
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTTTATTTTTTTAATTATAGGTG
3' ss Score
9.78
Exon sequences
Seq C1 exon
GTGACTTTGATCCAGAAGCTTAAGGAGGATAATTCTGTGAAGAGTGAAGAAGAGGTATTTCACTGCCCCATCTGCTTTAAGACATTCATCTGTAAAAATGACCTGGAAGCACACATGGAGACACATCCTGACACTACGCTCAG
Seq A exon
GTAGGCTTCGGATGCATTGTGCCTTGGTATTTGTTTTCTTAGATCATGTCTTTTATATCTAGTTAATCATTAGGTGTTAAAAACTGCATTGTTTTTATTTTTTTAATTATAG
Seq C2 exon
GTGCAACATTTGTTGCATTACCTTTCGCAAACACCGTGGTCTCCTGCGTCATAATGCTGCCATTCATAAACAGCTTCCAACTGACCCCTCTGGGCGACCTTTTATACAGAACAACCCCTCCATCCCACTGGGATTTGGCGATTTAGCTTTCATCGACTTCAGCTGTCAAAAGTTTCCACAAATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042652:ENSDART00000062563:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACTGCCCCATCTGCTTT
R:
ACAGCTGAAGTCGATGAAAGCT
Band lengths:
252-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]