DreINT0132130 @ danRer10
Intron Retention
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23824236-23827866:-
Coord C1 exon
chr6:23827779-23827866
Coord A exon
chr6:23824357-23827778
Coord C2 exon
chr6:23824236-23824356
Length
3422 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
AGCTTTTTTTTCATTTTCAGGTG
3' ss Score
12.08
Exon sequences
Seq C1 exon
CTATAGCTTTAAAACAGACAGTCAGCATGACCATGGTGTATCAGAGAGACACAGAGAAAGCATGGACAACGGAAATAGAACTGGAGAG
Seq A exon
GTATGTTTTCAGAAATTACTTTTCATACATTGTAATAAAGTTTACACTTTATTCTATGCATTGGTGTTCAATGGTGTAGGGGGGATTGATTAAAATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAAAAGACTCATATTTTAAAAGTCACCTATGGTGAAAACCAACTTTTGAAAGCTGTTTGGACAGAATTATGTGTAGGTATAGTGTGTCCACAGTCAAATTGAAGTAATATAAACACAATAAGTCTCTTTTTTTAATTTCCTGATGTTAAAATAGGATCCAAATACAATACAATACAATACTGCAATACTGAGGCCCACTTCAACGTGATGTAGGAGTGCGGTTTCCCTGTCCACCAAATTGATTGACTGCCATGTATTAACATGTGTCCATAGTAACGCGTAAAAGTATATCCACAAGACAGGCAAGCACAAAGCAACTGGGATTAAAAGATCTGTTCAGCTCTCTGTGATCATCTGCATCTCAAGAATGAGTTTTACAAGTTTAAAAGTTTTTAAAATAAAAAGAAAAAATGTAATAAGGAAAATTGCTGGGTAATTCATTACCACAGCCGCACATCAGTAAAATTAAAAAAGAACAAGCTTTATAACTAGATAGTGTACGACTCATCGTTGCAGAAAGGCTTGAATTAAGAAAGTTCTTAATGTAGTAAGGGAGATCTGCTTCATTCTTGTCTGTCACTGTGCTGTTTATCTATGCGAAACACAGCAGATGAAGGTTACACCCATCGGAGCGATCTTTATGCCTCTGACATGCACATACTCTAAAAACTGTGGAAGGGGAGAATCAGCTTTTTTGCATAACAGCTTCAATTCTGAAGCAATTTCCCATAGATGGCTTGCGGCTGGAAGTGTCAGGGTTCGGGAAGGATGAGGGAGCGAGGACTCAAGTGCAAACAATAATTGGGTTTTATTAATAATAAAGTACAAATAAAAAAAAAGGCAAAACAAAACTACCCCGAGGGGGAAGACATTAACAAAACACACAAACTTAGCTGGACTGACAAGACAAGGCAAGGCAAGGCAAGGCAAGGCAAGACAAGGCAAGACAAGACTGGAGCAGGAACACGGGGAGTGTAGACAACGAACTGGCAAAGGACTGAAAACATGAGGGGGATTATAAAGCAAAAAGTAAATTGACACACAGGTGAACACAATTAACTAATAATGGGTTAACAAGGAGGGTGGGACTAGACAATAGACGGGAGAGCGCATGACACAGAGAGACAATACAAGCCATGCGCTCACATAACACAACACTGAAGCACACGACAAAAACACGTGACCACAATGTAAACACCGAGCCACGTGCTTTGACAAAAGACGCAAGACACGAGCACACGATGAATGAAAACACTCACCGTGCGCTCACACATGCAGCATGCATGCTTCATCCCAGCGCCGACCAAAACCGAAACCAACAAGACTGAGACGCTGGGAATGAAACACCATGCTGCTGACAGACGAAACACAAACACGAGTACAAGAGCGCACGCGTCTGAGGGATGCAGAGCGCGCGCGGCCGCGTCAAGCAGGAGCGCGCACACTTTGCGTACACCCACGACGGCGCGCGCGCACATAGAGACAGAAACAGGACCAGACACGGGTAGTGTCAGAGATCTGCCACCAAAACAAGAATTTACAAGACCAAAGTGGCAGAACCTTGACAGGAAGGTCATCCGCTGCGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCAACGGATTAATAAAGGGAATAAGCCGACAAGAAAGTAAATGAATGAATGATTCTGAAGCAACAAAAGGCTCATATTAAATATTGAAAAAGGGGTAAAATAGGTGCCTTTATAATAATTTATTAAATAATTGTAATTGTTTAAGTATCATTCATTCATTCATTCATTTTCTTGTCTGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGCGGAATAAACCACCAACTTATCCAGCACATTTTTATGCAGTGGATGCCCTTTCAGTCGCAACCCATCTCTGGGAAATGTTTTACTATCATAACACATACAATTTTATATAATTTTTTTAAAGTATCAAAAAATCATGTAAAAATTTTTTTCTCAATTTTAATGATAATTTTAATGAGTATTTGTGTGATCATTTGATGCTAAAAACTTTATTAATGATGCTGAATATTCAGCTTCGCAACACACTGACACATTACATATTTTACTATTTTTAAATTGTAATTATAATTCACAGTATTTTTACAGTTGCTGAATTATTGATGAAGTAAATATAGTTATAGAGACATAAAGATCATAAACTTTAAAAAAGTATTGTATTTAAGTTAGGATTAAGTTAGCATTGTGTTCTAGGGGTAAATAATGTACAAAGATGTCTCTTTAAAGCCCACATGAACCGAAGACTGTGACCACATTTTTTTATGGAATATTAAATGAAAATAGGTGGATGTGACTTGTTTTTTTCTAGTGCAAGCTGATTGGATGTAGTAAACTGGGCATTTAATTCAAGAAAGATTGGGAAAAGGGTTTGAGGAGAGTTATTACTGATTCCTCCTCACCATTTCTGTTTGTTGTCAAAACTGACAGTTAGGGGTGTGTGGATAAATATGTTAAGCAAGTCCAATTGCTCAATAGATCTTAGATCTGAGAATTTTACTGAAAACATAAGATTTTAATTTTAAATTACAATTGCAAACATTTTTTTTATCTTAATGACATACACAGATTAATTGTGGACCACAAAACTAGCAGTGTGAGCTGACAAAACTATATGACTAGTTTTAATTTCATTTTTACATTAAAGGTACTGCCCTATTCTGTCACTTTCCTATGGCTTCTTCCCTGCTTTATTAGGGGTTGCCATACTGTAATGAGCCACCAATTACTCATATGGTTACTGGCAGATTCTCTTTCTACTATAATTCAGTCTTTCCAAGTACAATACTTGGAAACTTTTGAGCCATATAAAAACAGAGAGTATTTTCCTGTTAGCTCATCATATTGCCAGTTTTGTGGTGAACAATTCATCTGTGCATGTCATTAAGAAAAAAATGAAATCTGAAAGTGCACTTCCTGTTTGTTTTCAGTTAAATTATCAGATTACGTGATTTTGAGTTAATGGGTGTGGCTAACATACTTAATCATGTTGGTTTAACTGTGAATTTTGACAACAAATAGAAATTGTGAACAGGAGTCTATTAGGTTGTAATAACTCTTCTAAAACCCCTTTCCTGATCTTTATGAATGAAATGCCTATTTTACTACATCCATTCATCCCGCAGTAGAAAAAGCCACTGTCAATTATTATTCCATTAGAAACTACGTCACAATTCAAAAAAAAATTATCACAGCTTCCGGTTCATTGGCACTTAAAGCTTTTTTTTCATTTTCAG
Seq C2 exon
GTGTATGATAATAGTGCTCTTGCCAACTCTAAAGCATCGGGTCTGTCTTCAAGCAGCTATGAGCTCAGTCAGTATATGAATGGAGCTGAACAGAGTGAGCTTGAGCTCATTTCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554:ENSDART00000160547:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.341
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]