DreINT0132878 @ danRer10
Intron Retention
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30318846-30324965:+
Coord C1 exon
chr16:30318846-30318896
Coord A exon
chr16:30318897-30324826
Coord C2 exon
chr16:30324827-30324965
Length
5930 bp
Sequences
Splice sites
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
3' ss Seq
CCCTTCCAATACAACCACAGGAA
3' ss Score
5.71
Exon sequences
Seq C1 exon
ATGTCTTGGCAACGACTCGAAAGCAGAACCCTGCAGTGGACTCTGCATACG
Seq A exon
GTCAGTGCACTAATTCAGTCTTATAAGCTTTATATTCACTCACTCAAATTGCTTCAGTAAATGATTATACTTTGTCCAGCCGTTTTCACAGCCATGTTCATACCCATTAACCATTTTAAATCAGAAACTTTATGGCCAGCCATTATATTTCATCAAATTGGGTCTTGCATTCGACAATAGGCACAGATTGCTATTAGTTTTTGTTCGCATTGTGTCCCTGGTGTCTTGGTGTGAATATTGCATCATGTCTGGATTTTTTATATGTATCCAACAGTTTGCCTTTCACACACACGCATACATAAATCTTCAATCTGTCCTGTTCTGACCTCCGAACGACTCTTACAACAGCTCTCAAAGAGGCGTTAGTTTCGCAGATCAATAGAGTCCGTTACACAAATGACCTGCAGTGAGTTTGCAGATCTGGACGGCAGACAGAAATGTCCCGCAGAGCCGTTTCAGAGAGCTCTGAGCAAGAGGAACAACGCAGAATCACCATCTGACAAATTAATTTTTGGGCTGATTGGATGCGTGACGGAGAAAGAGAGAGAGAGAAACATGTTGTGATAGGCGGTGCATGCGTATGAGAGCATATGTGTGTGTGTTTTGGAAGGAGAAGAGGGAGTGTGTGAAAAGGGAGGGTGTGTTGAAGAGAGAAATAGAAATGTGCAGGGCTTTGGGTTTTATTTATTTATTTTTTTGCCGACTGTATTATATTTCAGACAGTCATGAGCTAATACTATCTGACAGCTGGCCTCTGTGTGTGAAAGTGTGTGTTAACATCCCTGGGTGGTGTTGTCTAGTTTGGCTTCTAAAGCGTGCCAGTGGATGCAGTGTGATCCGGGTCAGAGCGTACAGCTATTGTGGCACACACAATACACTCCCTCTCTCTCTTTCACACACACATATCAAAAGTCTCCATCCTCTGTGGATCATGGAGAAATATCCAGTATATTTTCCCATTAAACTTTGTATTACCATCTGGATTAGTCACATGAGGTTATTAGCAGAGATGAGTTTTGGTAAATAATACCATTTGCGAGTCACCTGCTTTGTTCTGTTCTAATCTCCAGCTAATGAATCAGTTCTACTGTTTTCTGAGCCGATTATTGTTCTACAATATATATTTTTTTCTTAAGACAGCATCCAATCTGTCCATCAGCCAATTAGAGAGAGGTGAATCACTCCCTGGGGACTGCATGGCTGAAGTCTGTTTCTGTCTGTTAGTAGAATATGGTGGGAATGGAAGGAGGGATGGAAGGATGAATAAGGGAGGGAAGGAAAGAAGGAAATATAGGAAGAAAAGAAGAATGAACAGATGAAGGAAAGAAGGGCAAACAGATGAAGGACAAGGATAAATAGATGAAGGGAAAAAATAATGGATGAAGGAAAGAAGCTTGAGTTTAATACAGCTTAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAAAATTAAACTGAGAAAGAAAAGAAGGGAAGGATAAGGATAAAGGAGAAGGATTAAGAATGAAGGATACATAGATGAAGAAAAAACGAATGAATAGATGAAGGAACGGAGCTTGAGTATAATATGGCATAGAAAGGAAGGAAGGAAGCAAGGAAGGAACAATGTAAGAAAAAAAAGAATAAACTGAGAAAGAAAAGACAGGAAGGATAAATATAAGGATAAAGGAAAAAAGAAAGAATGAATGGATGAAGAAAAGAAGCTTGAATGAAATATGGCATGGAAAAGAAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATGGATGAATAAAGAATGGATGCATTTATGGAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGGAAGGAAAGAATGGATGAGTGAATGGAATAAGAAACAACATATAAGAAGAAAAAATAATAAAGTGAGAGAGGAAAGAAGGGAAAGACGAGAAGGATAAATATAAGGATAAAGGAAATAGAATTAAGGATATATAGATGAAGAAAAGAATAATTAATGGATGAAGGACAGAAGCTTGAATTAAATATGGTATGGAAAAGAGGATGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATAATGAATGGATGAATTAATGGAAGAAGGAAGGAAGGAATAATAAATGGATGAATTAATGTAGGAAGGATGGAAGGAAGGAATAATAAATGGATGAATTAAGGAAGGAAGAAAGGAAGAAAGGAATAATGAATGGATGAATTAATGGAAGAGGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGATGAGTGAATGGAAAAAGGAACAACATATAAGAAGAAAATAGAATAAAGCGAGAGAGGATACAAGGGAAAATAGATGAAGGATGGAAGGATAAACGATGAAGGGAAAAATAATGAATGGAATTCAGCATGCAAAGGAGGATGGAAGGAAGGAAGGGATGGACGGATAGATGAATGATAAAAGACGAAAAGAAGATTAAACAGAAAGGAAATGAGGGAACTGGATGAAGGAAGGAAGAAATGAATGATAATATGATGTGAAAAAGAATGAATGGATGAAGGAAAGAGGAATTGGTGGAATGCTGCATGGAAATCGGGTTGAAAAGAATGGAAAGGAGAAAGATTAAGGAAGGAAAGGTAGAAGAATGAATATACGATTCAAAGCAGGAAGAATTAATAATTGATGAATACGGCAGGGAAGGGGGATAGGGGGATAAAAAAATTAATAAAAGAAAGAGTATAAATATAATAAAAGAAGAATGAACAGAGAAAGGAAAGAAGGAAAATGGATGATCTAAGGAAGGGAGGGAGAATGAATTTTTGAATGAAGTAAGAATAAATTGATAAAGGAAAGAAAGACTCAAGACCTTTCACTCAGTCCGACCAACATCATTCACTAAGTAGACTATTAATAATGCTAAAGAGGTTTCATTTGGGTCACGCCAAGTTTGGTGCAGACATCCATATTGGAATCTTGTGTCATGTGTTGTTAGGACACAGTGCAAGGAAGTAAAAAGGAGCAGAGATAGAGGTAGAGGCTGTAAGAGTGTGAAAGGTGAAGGTTGTTGATGGTAGCACTGGTCAGTGTGGGCTGCTGGACGAGTCTCTGAGCTCCTCTGTGTGATGCAGCTAATTCAATGAGCTTCCCCACGGCTTCATTCAGCAGCAGAGCTCCTCTTCCAGCCACTGCAAATGACACAGCAGAGCAGCTTCTCACCTCACGCTGAGACAAAGCCTCCCACGGCACCTTGGCAAGGTAATTAGAGCTCTACCTGCATTCAAGAGGAGTTATTACACCCTCAGAACTCTCGGCGTCTTCCCACTGCGTGATAAAGCCATCCCATTGTGAGAGGCCGAGGAAAATCTTCACAATGCACTGCTGTTTTCCGACAGCTCCTTTCTTCCGGCACCCTTTAAATAGAATGGAAACGGAAAGATAATAAAAGCGTCCCGTGCGCCAGCCCTGAGCTCCCCTGTTGAGCGGGCACTGTGTGGCACAGATGGCAAGATGACAGGCTTTATTTAGAGATGGGCAGGCGGAGGATGGGCTCTGGTCTGGCTGATGATGAGCACTGTGTGCCGCTACATTAAGCATTAGTTCAGTGATGGAGCTCTTCACAGCAGCCCGAACACACAAGGACACAGAGACAACTCCACAAGGTCATCTGTACTTAAATTCACTAAATCTCTGATTCAGCCTTATGAGGATGTCCTCAAAGTATGTGGTCCGCAAGTTGTGCTTAGGATCAGGGGTTTTAAGGACGGCGAAGGAGAAAGGGAGGGGAAACTTTTCAAAAAGAGGCTTCTGTGAGATTAGCTCAGTTCGGATCAAGTGTCTTCAAGTCCAAGTTTCGATTCTGCAATGCTCTGGGGCTCGAAATGCATGCGGTGGCACAACAAAACAAAGAAAATGTACTATTGATTTTGCTGCAAGAAGGTGTTTTGTTTTTTCTAGTTTTACGTGATTTGTACTGTGATTCCTATAGAACCCTTCACATCAACTTTAGAACTTCTCAAATCTTTAACTAAGCTTTTTTAAAGGGATAGTTCAGTCAGAAAAAGATTATTCTTTTATCGTTTACTAATCCTCAAAGCCCCAATATGCTAAAAGCTGAGTTATCTTCATTGTTAAAGAGGTTATAACAAGTTTAAAGTACAACTACATGCCACACAGCTAAAATGACTGCATAAAGATATGTTTTTTTCATCTTTATTTTATTAAAACTTTATAACTTTTATAACTGACTTTAACACCAAGTGGAAATGTTGTACGTTGTAGTTTATTAAGTTTTTTTAACAATCGTTTTATTGAGATGTAATAAAAATAACATCACAATCATATTTACATCTTTGTTTTTAATTTAGGGGAAAAGACAAAAATAACGGGAATTAAGTACAAAAGCAAAAATAAATAAAATAATAATAATTACAAAGGGAAATAAAAAGGGGGAAAGGGGGGGCACAGGTTGTTTAAATTAGTAACAGATTATTTTAGAGAAAACATGAGAAAGAAATTTTTTAAAACTATGGAAGGCATGTACTAAATCATCAATATGACAATGACTTGTTTAAACAAATCTTTGTAAATAGGCTAAGTCAATGTCAGTTTATTTAATCTTTTCCTGTTTCATTTAGTAAATGCTGAAATTTGAATTTGAAATAAGATATATAAAGGGTGTCCGCATTTTCTCAAAGTTTGCCTTTTAACGTGTATGAAATCTTTTCCATAGCTAAACAAAAGGACATATTATTGATCCACTTTACAATAGATGGCCTTTCCATTTTCCTCCAGTACATACAGTAGCTATTAAACGCTTTGCTTGGAGTATACTTATATCTGTAGTTTACTAAGTTACGTTATCTTAATCCTTTAGCTGCCCCACTAACAAACAAAAAATTGGATTGAAGTTCTTAACTCCTAATGTCACTATTTAACAAACTCGATGCATTTTTTTTTTAAATTCCCCATCTCATAATTTCTAGATTATCAACTATTTGGTAAACTCTCAGAAACAAAGGTACAGGAGCTGTCACTGGGGCAGTACCTCTTCAAATTTGTACCTGAAGGGTCCATAATGGTACCTCTAAGGCACTTTTTTGGTACATTTGGGCACTAATATGCACCTTTGAGGTACCACTGTGGACTCTTTGGATACAAATATGTATCTATAAAAAGGCTACTGACCTGGTGACAGCTCCCATATGTGTATTTCTGAGAGTGTAGAAGTTGATATGTTGGTTTACAGTAAAGGTACTGAAATGAACACATATACTAGGAAAAATCTGAAAATCTGAAGTGTAAGACCAACTTATTTAAAACATGATCAAAATAAAACATTTTTTATTACTAAATCATCTTTTTTTCTAAGTATGCTATTTAATATTTCAGATTCTTTGTAAACCAACAATGTTGTGTGTGCAAACCATTATTTAACACAGTCATTCTTTCATTATTTAAAACAGTCAAAATATGGTCCACCGTTTGGTAGAGCAGGCAGTTTTAAAAGCTCATGAATGTCTAAGCTAGTACTGAAAACAAGAAATTAGATTTCTAAGGATGAACTTCAGTCACACTCCCTGTACCATTGATCAATGATAGCTTGAATGTGTTTACAAGCCGAAGCCAATTTTTTCAAAACATTTCAACTATTAAAAGTAATTCCAAATAAGCTTTGACTTATAACTTTGAAATGATGTTGACTGAAGTATACTTCAGTATACTTAAGTATAACAAAGTGTTAATTTTTGGCTGAACTATCCCTTAACGATATCCTACAGAAATGGGAATATGGTGAACTAACACTTTTCAATGGATGTTTTCCTGATTTCAAATGCATATTATGGATACTTTTGTTTAGTAACTTTGTTACCCCCCTTCCAATACAACCACAG
Seq C2 exon
GAAAGACCTCACCCACAAGTGCCAGCACAACCAATCAGGGGCCAGCTGGTGCCCCTGAGACAGGTACCCACCCCGAGGAGGGGAGGCGGGGAGGGCAGGGGTCTCCTGACTTGGAGCCCGGCAGTGTGGAGATGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189:ENSDART00000135723:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(13.8=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]