DreEX0065168 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30318846-30351268:+
Coord C1 exon
chr16:30318846-30318896
Coord A exon
chr16:30324827-30324964
Coord C2 exon
chr16:30346121-30351268
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCAATACAACCACAGGAA
3' ss Score
5.71
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGTCTTGGCAACGACTCGAAAGCAGAACCCTGCAGTGGACTCTGCATACG
Seq A exon
GAAAGACCTCACCCACAAGTGCCAGCACAACCAATCAGGGGCCAGCTGGTGCCCCTGAGACAGGTACCCACCCCGAGGAGGGGAGGCGGGGAGGGCAGGGGTCTCCTGACTTGGAGCCCGGCAGTGTGGAGATGGAGG
Seq C2 exon
GAGTGCGCCGACCCCCTGAGGTTGATAAGTCCAACCACAGTGTTCACTACACCCTGCTCATAGCGTGTGTCCTGGTGGCGTTCGTCCTGGGAGCTTTCCTCTCCGGATTCCTTGTTTCCTGTTACTGCAACCACAACGTTAACAAGACGAAAAGGCTGTCGAAAGATCCAGAAGCGCCGATCCCACATGCTCTCTCCCTGCGCAGCTTGGCCAAGCTCAATGGCTTGCTGGAGAGCCAAAACAAGGACGAGAAACTAGAGGTGTCCTCACCCAAACTCTACAACTCATTCTTTGCCAATGGGAAAGAGCAAGCACATCGCAGGAATGCCCACCATGCTGCCATGACAGAGCTCATTCACCCACATCATCACCACTCTGCTGAGCTCTCCGGCCTTCCCACACCAGATTCGACACCAGAGCTCCCAATCAAGAGCATGAAGGCCTTTAAGAACCAGTGGGAGAAGAACCAAAACTGCAATAACGCTAAAGAACCCAAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=1.000 C2=0.786
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(13.8=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACGACTCGAAAGCAGAA
R:
AGGGAGAGAGCATGTGGGATC
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]