BtaEX0031903 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007281 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr3:19726167-19728079:+
Coord C1 exon
chr3:19726167-19726211
Coord A exon
chr3:19726560-19726655
Coord C2 exon
chr3:19727091-19728079
Length
96 bp
Sequences
Splice sites
3' ss Seq
GACCTGGTCTCTGTCATCAGTGC
3' ss Score
6.96
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGGAGCTACTGGGAGTCAGTCTGGTACAGGGGATTCCACTTATG
Seq A exon
TGCTTCTGAGTCCTGGCCCTTCCCCTGAGACCCCCAGTCCCCCCAGTGATGCCCACCCCCGGCCCCAGTCTTCCACTCTTGGAGCTCACACTCAGG
Seq C2 exon
GCGTGCGGCGGGACCTCCCTCCAGCCTCAGCCTCCCGCTCAGTCCCCATCCCACTCCTTCTGGCCTGTGTGGCTGCGGCCTTCGCTCTGGGCGCCTCGGTCTCTGGCCTCCTGGTCTCCTGCGCCTGTCGCCGAGCGCACCGACGGCGGAGCAAGGATATCGAGTCTGCAGGGATCCCACGTCCTCTCTCCCTCCGCAGCTTGGCCCGGCTGCATGGGGCGGGCCCAGAGCCGCCGCCGCCGTCCAAGGACGGAGAGGGGGCCCAGACGCCGCAGCTCTACACCACCTTCCTGCCTCCCCCCGAGGGCGTACCCCCGCCGGAGCTGGCCTGCCTGCCCACCCCGGAGTCCACGCCAGAGCTGCCGGTCAAGCACCTCCGCCATGCTGGAGGTCCCTGGGAGTGGAACCAGAACGGGAATAACGCCAAGGAGGGCCGGAGCCGCGCCCGGGGCGGGAACGCGGCGGGTGGCGCCGCGCCGCGCGTGCTGGTGAAGCCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007281_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=1.000 C2=0.882
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(11.3=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAGGGGATTCCACTTATG
R:
GATATCCTTGCTCCGCCGTC
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development