RnoEX0079398 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196341891-196343987:+
Coord C1 exon
chr2:196341891-196341935
Coord A exon
chr2:196342138-196342233
Coord C2 exon
chr2:196342602-196343987
Length
96 bp
Sequences
Splice sites
3' ss Seq
GACCTGGTCTCTGTTACCAGTGC
3' ss Score
7.16
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGGAGCGACTGGGAGTCAGTCTGGCCCTGGAGATTCTGCCTATG
Seq A exon
TGCTTCTGGGTCCTGGCCCTTCCCCTGAGACCCCCAGTTCCCCCAGTGATGCCCACCCAGGGCCCCAGTCTTCCACTCTTGGAGCTCACACTCAGG
Seq C2 exon
GCGTGCGCAGGGACCTTTCCCCAGCCTCAGCCTCCCGATCCATCCCCATCCCACTCCTCCTGGCCTGTGTGGCGGCGGCCTTCGCTTTGGGCGCCTCAGTCTCCGGCCTCTTGGTGTCCTGTGCTTGTCGTCGCGCGAACCGCCGTCGGAGCAAGGACATCGAGACCCCGGGGCTGCCGCGCCCCCTCTCCCTTCGCAGTCTGGCGAGGCTGCACGGTGGCGGTCCTGAGCCCCCGCCTCCGCCCAAGGATGGTGATGCAGCGCAAACGCCCCAGCTCTACACTACCTTCCTGCCTCCGCCCGAGGGCGGATCCCCACCGGAGCTGGCCTGCCTGCCCACCCCGGAGACCACGCCCGAGCTGCCGGTGAAGCACCTCCGTGCCTCCGGGGGTCCCTGGGAGTGGAACCAGAACGGGAACAACGCTTCGGAGGGCCCAGGCCGCCCACGGGGCTGCAGCGCGGCGGGCGGGCCCGCCCCGCGCGTGCTGGTGAGGCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=1.000 C2=0.882
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(11.3=43.8)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGAGATTCTGCCTATG
R:
CGATGTCCTTGCTCCGACG
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]