DreINT0133534 @ danRer10
Intron Retention
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22098966-22099847:-
Coord C1 exon
chr16:22099495-22099847
Coord A exon
chr16:22099083-22099494
Coord C2 exon
chr16:22098966-22099082
Length
412 bp
Sequences
Splice sites
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
3' ss Seq
GTACCTTTGCTTGTTTTTAGATC
3' ss Score
9.72
Exon sequences
Seq C1 exon
ATGTCATTCCACGTCATCTACAAGTCCCCGTGTGGCTTGAGTCTAAGGAATATGACGGAGATCCAGCGCTACCTCTTCCAGACTCAATGTGACTTCATCTTCCTGGAGATGTTCTGTCTGGACCCCTATGTGCTGGTGGACCGCCGATTCCAACCTCAGAGGCCCTTCTACTTCATTAGAGACATCACGAGTGGTCGTGAAGACATTCCCCTGTCCTGTGTGAATGAGATTGACAACACGCCACCACCCAGCGTGGCCTATAGCAAAGAGAGGATCCCAGAAGATGGAGTATATATTAATACCAGTGCAGACTTCCTGGTGGGCTGTGACTGCACCGATGGATGCAGAGACAA
Seq A exon
GTTAGTATAATTGATAAGCTGTCATAAGAGAAGTAAAACAAACAAACAAACAAAATATGTCTTAGTGCACATTGGGAACAGTTACTAAATGCAAGTTTAGTTATTTGTCTCAGTTAGAAATACATGACAGTACAAAAGTCAGTAGCAACCTCTCACACACATTTTCTTCTTTGTTTTGAAAGAAAAGAATTAAATAATAATTGTTTTCAAAAATTTGAGAAAAGTGAGTGAATGCTAACACATTTAAGGTGTTTGTTGAAGGTGAGTTGCGTTTTGCTGCATCTTGTGACTTTTTTAACCTCAAAATTGAGACTTCTCTGGGAAATATACAATGCATTGCATTGGTATAAAACGCAAAGAGTTGATTTCTAAGACTTGATTTCTTTCATTGTGTACCTTTGCTTGTTTTTAG
Seq C2 exon
ATCCAAGTGCTCGTGTCATCAGCTGACTCTACAGGCTACAGGATGTACTCCAGGTGGGCAGATCAACCCCAACGCTGGATACCATTATAAGAGACTGGATGAATGTCTCCCTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021:ENSDART00000165824:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142914=MBD=PD(62.7=39.8),PF0503311=Pre-SET=PU(49.6=48.3)
A:
NA
C2:
PF0503311=Pre-SET=FE(33.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTGGCTTGAGTCTAAGG
R:
AGCTGATGACACGAGCACTTG
Band lengths:
350-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]