DreINT0135063 @ danRer10
Intron Retention
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52069971-52070302:-
Coord C1 exon
chr16:52070162-52070302
Coord A exon
chr16:52070085-52070161
Coord C2 exon
chr16:52069971-52070084
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TTTCTTGTTTTGATATACAGATG
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTGTTCAAGTTCATCTACGCATGTCGTCTGGCGGAGTCTGGTCTCTGCGCTCAAGCTTTTCATTACTGTGAGGTCATTTCCCGCACACTGTTGAGTCTGCCGGAGTATTACTCTCCTGTGTTCATCAGTCAGCTCATACAG
Seq A exon
GTACACTCAACAACATTCTGTCTGTGTGTCTGCGGACTTATTCCCTCAAGTCTAATGTTTCTTGTTTTGATATACAG
Seq C2 exon
ATGTCTCTGAGGTTAAGGTTTTTTGACCCTCAGCTGAAGGAACGGCCGGAGCAGGAGTTGTTTATAGAGCCTGATTGGTTACTTCATCTCAGACAACTCGATGGACAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300:ENSDART00000092348:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTGCGCTCAAGCTTTT
R:
ATAAACAACTCCTGCTCCGGC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]