DreINT0135083 @ danRer10
Intron Retention
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52078315-52078839:-
Coord C1 exon
chr16:52078697-52078839
Coord A exon
chr16:52078377-52078696
Coord C2 exon
chr16:52078315-52078376
Length
320 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TGGTTGTGATGCTTTTCCAGACG
3' ss Score
6.46
Exon sequences
Seq C1 exon
CTCCTCCAAGACCGTTGACCCCGGAGAAGTTTTCTATTCCTCATCGTTGTGCTCGTTTTGGTCCAGCTGGTCAGCTGATCCTTGTCCAACCCAACCTGCCCTCTGCTGGTCAGCCCACACTAGTAGAAATCCACAGTATGGAG
Seq A exon
GTAAAAAAAATACACTGCGATATAAATCAAAAGTTCTCGACACTGTTATATCTCAAACTATGAGGGTTTTAGTTAAAAAAACTAGATCTTTCTTAACTACAATACCTGCATTTAAAATCAATACCTCTACAAAAAAGTTGTGTCGTTCAGCTGATTGAGTTTCATTTTGTGCATATGTTTATATCTAGGTACATTTTTACCACTGTGCCTCTTAATGTTCCTCCATGTAGTTTTGCTTTTCATAATTAGTTCTAAATACTTTCACAATGATTTCAGTTACATTACATGCGTCTAATATCTTGGTTGTGATGCTTTTCCAG
Seq C2 exon
ACGCTCCTGCAGGATTCTCCAGAGCAGTCAGACATGCGTTCATTCCCAGGCCCGCTGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300:ENSDART00000092348:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCAAGACCGTTGACCC
R:
GCGGGCCTGGGAATGAAC
Band lengths:
198-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]