DreINT0136215 @ danRer10
Intron Retention
Gene
ENSDARG00000101327 | si:ch211-145h19.6
Description
si:ch211-145h19.6 [Source:ZFIN;Acc:ZDB-GENE-110913-64]
Coordinates
chr4:67890546-67891228:-
Coord C1 exon
chr4:67891135-67891228
Coord A exon
chr4:67890696-67891134
Coord C2 exon
chr4:67890546-67890695
Length
439 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTCT
5' ss Score
0.28
3' ss Seq
GTTTTGTTCATTTTAAACAGGGC
3' ss Score
8.64
Exon sequences
Seq C1 exon
AAAAAAGCTAAACAAAAAAAAGACTTTTATTTTGCCGTGGTGTGTGACATCATAAGGCTGCGCCGCTCCTGCGCTGGGATTCAACTGGAGAAAG
Seq A exon
GTTTCTGTTTAAAACTTTTACACAGATATAAACCAATCGATTAAAGTGTCATCCAATGCTAAATTATGAAGCTGCTGTTGAAAATATTATTTAACCCTTTATACAACGTAGTACTATTTTACTCACAGTAATGAGGACTACTGTTTGAATAAGTTAACAGAAATGTGTGTAACAAGTGTTTTAATGTAGGTTTAATTTATTAAATAGTATAATGTTATTTCATTCTAAGTATACTTCACTATATAAGAAATGGAGTACTAGTTTTAATCAGGTCATTTGTGGCTGTTGTTTTTTGCTCGGACTTACCTGATTTCTTTTGTTCATCACTCTCATATAAAGAAACTGCTGAAGCAAGTGTTGAAGAGAAGTTCTTTTGTTTCTGTTCATTGTTTTATTTATTTAAACAGGACATTTTTATAGTTTTGTTCATTTTAAACAG
Seq C2 exon
GGCAAAGTGTCAAAACGCAGAGAGAAACTCCTGCTGAAGCGACTGATCTCCACACTGTTATAAAGATGGTGTTTATTAAAGAGGAGAGTGAAGATGTGAAGATTGAAGAAACATTCAGAGTCAAACAGGAAAATCTGCAGAAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101327:ENSDART00000168915:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.172
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTATTTTGCCGTGGTGTGTG
R:
CTGTTTGTTTCTGCAGATTTTCCTGT
Band lengths:
222-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]