Special

MmuINT0178706 @ mm9

Intron Retention

Gene
ENSMUSG00000039634 | Zfp189
Description
zinc finger protein 189 [Source:MGI Symbol;Acc:MGI:2444707]
Coordinates
chr4:49535270-49544417:+
Coord C1 exon
chr4:49535270-49535354
Coord A exon
chr4:49535355-49541888
Coord C2 exon
chr4:49541889-49544417
Length
6534 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTTATTTACAAATATTTCAGATG
3' ss Score
7.72
Exon sequences
Seq C1 exon
GAGGAGTGGGGTTATCTGGATCCAGCTCCGAGAAGCCTGTATAAAGATGTCATGATGGACAGCTACGGAAAGCTGGTCTCGCTGG
Seq A exon
GTAAGAATGCACGCTTTTTCTAACTAAAATATCTAATAAGGTACTAACACTTAAACCCAGAATGCGTCAAGCAGTGTAACTGACACCAGCACTATTTTGTCCCAACCTTCTGATTCGGATCTTTCTACAACTCTGGTCTCCCTCGCTTCCTTGTTAGCAAAGGCTGGCTTTGGCAGCTTCAGAATCTCATTCCCAGACGGCTCTGTTGGCTCTGTACTTTCCTTCCCGGTTCATCTTCCCACGGCTCTCCTCCCACCCTCTTTTCACTCTGCCTTCTGGAGCCTGGGCTGCTCATCACACAGTGTTCCTTACCGCTCCGGCCTACACTGAAAGCTGGCACAGAGCCGAGCACACCACTTCTCTGGCAGACCTTCAAGTGGGGGCTGCTCATTCTCCCGGGTCCTCCTTCCTCTTGCTTTGTCTCAGGACTGGGAGGCAGAAGTTAAGTGTTCTCCCAGCTCTCCCAGTGCTTGTCCCAAAGCATTTATTTTTCCACCTTCCAGGAGCATGTCCTCATGTGGGGTCAGCAGTCCTGTTTCCCCCAGTGCTCCTGTTTATCATCATCTGTCACGACCCTCCCACTCCCACTACCTCCCACCCCCACCACCTCCCACTACCACCCCCCCACCACCACCACCCTGCTTAACCCAGTCATTGAGTGAGCTGCAGTGGGTCTTGATCCTGTAAACTTCAGGAACCCTGCTTTCCATACCATTGACTCTGGCCTTAATTTTGTTATGACAAGCAAGTCTGAAAACACAGTATCCTGGTCTCTGACCACTGTTGACAACTAAACAAAGAGCCAGAAAGGCTTGCTTCTTGCCCTGGTGGAGCCTAACTGCAGCTTACATTTCCGTCTTTCCTTCACCTTTCCACTTGAAGCAATTCATTCATAATGCATTTTCCGTCCCGTGATGTGTTCATGTCTCCCCCATGGTTTCAGTTCTCCCGACTTGTGAAGATCTCTTCTAATTGCCAGCATGTTGTCTGGCCACTTTGATACTATTGCTATACTTACTCTGCAAATTTCAAATCATGTATCTTTTATAAGATCTGTCCCTTCTGTCCCCTTCTACCTGATTCCCAAGCATCGCAGGATCAGTGTCCTACAAGTATCTAGTGAGGAGGGTTTTTTGTTTTCTTTTTGTTTTAGTTTGGTTTGGTTTGACTTCTTTGAGACGGGTTCTCACTGTGAGGCCCCGGTTGGCATGGAACTCACTCTATAGACCAGGCTGGGCTGGAGGATCAAGCGAGCCTAGGGCCTTGTTGATGCTAAACATCTTCTCTACCAGTGAAGTACAGCCCCAGCTCTTTACCTTAGTAACCCTTGTTCTAATATAGATTTATATCATGGTCTTCCCAACTTGGGGGAAAGAAAGAAACTTAACTGGACCAATGGCTCCCTCATGCTGTTTTCTGTGACTTACTACATTTCTTTTGCCCGTCAAGGTTTTATTAATTCCTGTGTATTTTATACAACTCTACCTTCTCATGTCTGTGATTTTTGTCTTGCCTGCTCAGACTCCTCAGACACATTTTGGACCTTATTCTACCTTTTTATGGATGTTTATGACTTTGTTTTAAGACAGGTTTTTGCTTCAAAGCCCAGGCTGGCTTCAAATTCACAATCTTCTTGCTCCAGTCACCCAAATTACTGAGACTTCAGGCATGCCCCCACTGCACATCTGTTTAAAGCTCTTTATAGCTTTTTTTCTGTTTGCTTGTGTTCCTTGCTCTCTATACCCTTTGCTCAGAGGGCCTTCCCTGTACTCAGATCATTGGCTGCCACCACTCGATGGTAAATCTCATCTATGAGAGGTAATATGGCACCCACCTACATCCTACGTGTGAATCTGACCTCTTCCACTGCCAGTTTCGTGACTGTGGGGAAATCTTTTCATTTTTCTTCAGTAAATGGAAATAGTAACAACATGTACTTCTTAGGTTGTTGTTTCTCTAACTGGGCTAATATATAGGTAAAGTACTTCAAATGCTGATCAGCGAATAATAAAAATAATGACAGTCTTAGTTGATGTTTCCTGTTTTACACCACCACCTCCCCCCCCCCCTTCATTTGATTGATATTTTTTCTTTTCACCTCTATTGAGTATCACATTTGCAGTTTTCTTCTTTTGGAAACAATGTAAGTTATGTCTGACAAGTCTCAGGAGTCTCCTCTGCACAGTGAAGTTCCCCCTCTTTACTACTTTGTCTTGACTGCCATTTCTATCATTCTGCAAACCATTCTTTATGTTCATTCTTAGGACACACTGGTCAGCACTGAGGGCAGTAACTGTCTTTTTCATTGCATGTTTCCAGCACTTACCATAAAGCTAGGCCTGAATCACATGCTGCTTGAATGGTCATGTTTCTGGGGAAGAACACAAGTTAATTTAAAAACTGTTGCTCGTGGTTGGATTATTGCCTCAACACTAAACTGCTTAGCACTAACTACACTAAGTTCTCACCACCAAGATGATTTTGTACTTGTATATGTTTAAAACTTTTGATGGTTTCTGGTACTTTAAGGGATAAAAATCTTAATTTTCTATCACACTGGAAGCTGAACAAGTTCAGCTCTTTTCTTTATTTAATATCAAGTACAGCTTCTCACTGTTCTTTATTTTACTCCTTCCACGGTCTCTTCAATAGATGCTGCTTCCGTTCCCTTGATGAGTGCTCCCTACCTTGATGAGTGCTCCCTACCTTGATGAGTGCTCCCTTAACCCCAGATCCCTGTGCTCTTCTGCTCCAATGTACTATTATCCACTTCATCTGATAGTTTTCAAAACATATCTCTTTATAGTATTGGCTCTTCATACCTTTTCATGATGATTTTTTTATCTTCAAATTTTTAATAGTAACCTTGATGATAAAGATAATAGCTAATCACTCAGTTCTTTGGTTGTTATTTCAGTGACTCATGCTGGATCTCCTAAGAACTGAGAGTCATTGAGCCTACAAAACCTTGAGCTCAACTTTTTTCTTTTCTTTGACCATGTTCTCTCCTCAGTTAAAGTACTCGTTCTATATGAGCAGTCACTAAACACTGTGCTAGGCCCTACAAATTCCAGCTCTCCATTCTCCAATTTTGTTAACCAAAAGAATTGTCCATCATATAATCTGTTAGGTAGCAAAATTATCAACTGTGGCCACAGGTCAAATCTGTCCCACAGTCTGTTTTCATAAATCAATTTTTTATTCAAACAGGCAAACCCACACCTTAATGCAATGTCATTAATACTTTTGAGCTATAATAGCAGGGATTATATAGCTAGAGTGAAAATAATGTCTGACCCTTTATGGAAAAAGTATAAACTACAGTTCTAAAGTTGATTTAGAGTCATGTTACCATCAATATCTTCTTAGCCATCAGATTATTAGTCCTATTTAGTGGAAGATATTAATTAATGCTAGTATAAGCCACTAAGGGGATTTTTTAAATAGGGCCATATATCTTATACAAAAACAGGCATGATTATAGCTGATGCGAATAGTACTGGAAGAAGTTAAGTCAGTCACAAGAAGTAAGGGATTGTGTGTATGGGTTTTGTTTTAGTCAAATTGAGCTGCTGTAATAAAGACTGTAAGCTAGGTGCTGTAAAAACAGTTGTTTGTCTCTGCTCCCCTAGATCTGTGAAGCACCACCAAACAGTCCATATTGCATCCTCATATTTTGCATAAGGAGAAATTATATATTTTCAATTTATGTTTAGAATTCTTTCCACAGTTCTGAGGAGCTTCCTAAAGGTCTCAGAGTTTACCATTTTGCTGAGGCGCAAGCCACACCTTTGCTCCTAGACTCTGTAGTATTTACTAGCTGATTTTTGTGGTAATGCACATATACCAGAAAAATCTTATTTTCTTGAATAAACAGCCAGATAAAGGACAGAGTAGCAATAGTTTCCAAGGAAACTTGTTGCTTACTATGGTTATTAACAAAAATAGTTAGCATTTAAGGAAAGAAAAACACCTAAATCTATTTGGTAAATTTTGCAAGGACTTTTTAGGGTAACTCCTTTGGGCCAAGTCCCAAAGACCCAAGGGCATCTTTGGTAAACAGTGTTAAAGAATGACTATTAAGTGACATCTACAAAAGTATGATGTCAAAGACTGGACAAGTGATTTCCCCATGTATTATATCTTACCTATCGAATAGAAAGATTGATTGAGGCTTGGGGGCCATATCATGACAAGTTTGATAATATCATAATCAAAAGGAACTATCACTTCATCTTAAAGTGATGTGGTTGGTAAATCCTCAGGTAATGACATGAATAGAATTTTATTTCTAAACATCTGGATCCATAAGGCTAATGTAGTGCAATGGCAACCTTAAGATAAATGGGTATCTGGTTATGAAAATTAAGGTAAGAAATAGATATTAGAAAGAAATCTATAGTTTCTTCAGATTAACAGAAAAAAGGGAGAAATCTAGGATTTGAGAATAATAAATAGTGGTGTAGATTAGAAATGAAGAGACATTAAGAGATGATGATGACGACGACGACGACGATACATTTAACTGGAAGGTATTTTGTATAGGGATATAATCCTGAGTAACAGCTACACAAAGCAGTTGTCAAAGGTAGATGAAATAATGAGGTAAATTCAGTAGAAAAAGCCAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTGCATCAAAAAGAGAAGCAGGGTTAAGAAATGGGCGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGAACAGCCAGGGCTACACAGGGAAACCCTGTCTCAAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAAAGAAAAAAGAAAAGAAAAGAAAAGGAGTGATCAACAATATTGGATGCTGCCGAATAAAATAAAGACTATAAAATTCACTGTGTTGTTGGAAAGTCTTTAGTAATTTGGTGAGAAGTTCTCTCTCTGTTCTCTGTTCTAGAAACAAAATATGCTTTGTTGTAGCTTACAGAATAAATCTAATAGGGAGAAGGTGAGGAATAAGAAATCCAACAGAAAGCTACAGTATAGGATTTTGTTTCGGGTAGCTTCTATCAAGAAAAAAAAGATTTCAGGCTCAAAATGGAGTAGGTCATGCCATGGTAGGAAGATGCCAATTGAAAGAAGAGGAAAGAACTGAACACCTGCTCAGAAGAGAGTGGGGTCAGGAGGGGGAGTGAAACACTGTTGGAAATGAGTGACATATACGTCCCCTGTTACAGATAGTTTTTATGGGTAGAGGTAGAAAGTTGAGGGACTTTACATTCTGCTTTTGTTGTGTTAAAGGAAGCAAATTAATGAAGTGAATCTGAGAGGAGATACTAGCCTAAGAAACAAGCCAAGGTTCTAGTAGTTGCTTAGGGGATGAGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTATGTATTTTAATTGGGGAAAGGTGGTATACACTAGCTTAGTAATGTCTGAAGTCATTAAAAAACTAGAAGACAACAAAATTGTGAGAAAGACAATTTTGGAAAAGGAACTTGTTTAGGGTCAAATATGAAATAGAGTTATCAAACAGCTGGAGTTAGAAAATCAGCCTGGTACTCTTTTATCATATAGCATTGTATTCTTTTCCCTTCACTTATGCAAGGGTTTGTTAGATGGTATGCTTTGTTGCAGATGATATCCTAAACTACCACAGATGACTTTTTTTCCCCGTTAGCTATTAACATAGTTATATTTTATTCTTGTGGATAGATAGCTCAATCCTTTATTGCACGTGCTGCTATCTACTTAATATGTTATCATTTCTCTTGATATTTTCTCTCCAGTTTTACTTAACGCCATTTTATTTGGTAGTGTTTTATGTCTCATCTTTGAATCCTGGCTGATAACTTAGTAAGTACATTGCATGCATTGGGTGGTCAGTCAGTAAATTCTGTTAATACATTAACTGTGGAATCCTCTGTTCTTTGTTTTCCATCCCTCTGAGGATCCTCTTTTTTGTCCTTTCCTCTCAGTTGTTGGTCTAGTTATATTCTAAAAACTTTCCAATGCTTGCTCATTCTCAATTTCCTTAACTTAATATTTTCTTCCTATGGTATCTTTTCTTTGATAGTTTCAAGGCTGTAAAAAAGAAAAACAATAAATCAATCAGATAACTAATGTTAAATAATACGCACAGTGACACACACCTATAGTCCTAGCTATCTTAAAGATGCTGAAACTGAATCTTATGAGCCCAAGAGTTCAGGCCAGTCTAGGAAATATATCTTGCCTCTTAAATAATTATTTGATAAAATATATATTATGAGCTAGTTTTAAAACTTAAGTAGTAAAAGAAAATACACATTAGCTATAGTAGGTTGAGTTAGCTTGATGACCGTGTTTTTCTAATAATTTCTCCTTTTCATTAAAGTGCTTGGCTGATACTTACACTTTTTATTTACAAATATTTCAG
Seq C2 exon
ATGTTTTAAACAGAAATAAAGATGAAGAGCCAACTGTGAAAGAAGAACTTGAGAAAGATATCGAGCCACAGGGTGTAATAGTTACAAGAATCAAAAGTGAAATTGATCAAGATCCTGTGGGTAGCGAAACCTTTGAACTTGTTGGTAGGTTAGATAAACAAAGAGGGATCTTTTTGTGGGAAATACCACGTGACTCTCTGAGTGAGGAACAGAAACTATTTAGAGGGCACACTAATGTCCGTAAGAGACCAACTTCAGAAGAGAAGTGTCATAAATGTGAAGAATGTGGAAAACGTTTTGTCCGCAAGGCCCATTTCATTCAGCATCAAAGGGTCCACACGGGTGAGAAACCTTTTCAGTGCAACGAGTGTGGGAAAAGCTTCAGTCGAAGTTCCTTTGTTATTGAACATCAGAGAATTCACACTGGGGAACGACCCTATGAGTGTAATTACTGTGGGAAAACCTTTAGTGTGAGCTCTACCCTTATTAGACACCAGAGAATCCACACTGGAGAAAGGCCTTACCAGTGTAATCAGTGTAAACAGAGCTTCAGCCAGAGAAGGAGCCTTGTGAAACACCAAAGAATTCACACTGGTGAGAAACCCCATAAATGCAGTGACTGTGGAAAAGCCTTCAGTTGGAAATCCCACCTTATTGAGCATCAGAGGACCCACACTGGTGAGAAACCCTATCACTGTACCAAATGCAAGAAAAGTTTTAGTCGAAACTCATTGCTTGTTGAACACCAGAGAATTCATACCGGAGAAAGACCTCATAAGTGTGGTGAATGTGGGAAAGCGTTCAGATTAAGTACATACCTTATACAACACCAAAAAATACACACTGGTGAGAAGCCTTTTCTTTGTATTGAATGTGGAAAGAGTTTCAGTCGGAGCTCATTCCTTATTGAACATCAGAGGATCCATACGGGGGAACGCCCTTATCAGTGCCAAGAGTGCGGGAAAAGTTTCAGTCAACTTTGCAACCTTACCCGTCATCAGAGAATTCACACGGGGGACAAACCCCACAAGTGTGAGGAGTGTGGGAAAGCCTTCAGTAGAAGCTCAGGTCTCATTCAGCACCAGAGAATCCATATCAGGGAAAAGACTTCGCCATTCAGTGAAACTAAGGAAAGTTTTGATCCAAACTGCAGTCTGGTTATACAGCAGGAAGTCTCCCCTAAGGAGAAATCGTACAAATGCGATGACTGTGGGAAAACGTTCAGTGTCAGTGCTCATCTTGTACAGCATCAGAGGATCCACACTGGTGAGAAGCCCTACCTGTGTACTGTCTGCGGGAAAAGCTTCAGTCGGAGCTCGTTTCTTATTGAGCATCAGAGAATCCACACTGGGGAGAGACCCTATCTGTGCAGACAGTGTGGCAAAAGTTTTAGTCAACTTTGTAATCTCATCCGCCATCAGGGCGTTCACACTGGTAACAAGCCCCACAAGTGTGAGGAGTGTGGGAAAGCCTTCAGCAGGAACTCAGGTCTCATTCAGCACCAGAGAATCCACACAGGAGAGAAGCCTTATAGGTGTGGAAAATGTGACAAAAGTTTTAGTCAACAGCGCAGCCTTGTCAACCATCAGAAGATCCATGCAGAGGTGAAAACCCAGGAAATTTATGAATGTGATGCCTGCGGCGAAGCCTTTACTTGTCAGATTTCTCTAATTCAGCATCAAAAGTTGCATATTATGTGGATGCAGTAAAATTAGGGATATTTTAATGCTTAAATCTGTGACTAGCTACCAAAGTGCAGTTTTAATACGGCCCAACGTGGGTCAAATATAGTGGTAAAGCAAATACTTGTTGGCTTCATGAAGAATAGTTTCTAAAGATCCTATGAATAGTGGGCAGTGCCTGTGGGGAACTGACTTGGCGATTACTAGTTGTTTTCATAGCCACAGAGATTTGATTTATCTAAGCCTCTAACCTTTCAGTAGAGTCGACTGGGCAAGGCATATGAGGAAAGTTCTGAAGGGCACAGTGAAATTAGTGTACCGAATAGGGAGCAACTGATCCTGGGAAGCTAGGAATAATTCAAAAGTCTTATGTTGCCATCTCCTGTAGTTGCCCTTCAGTTCTATGAAGTTTGACTATACGTGTCAAACCTCAGTGACTAAGCAAATGTAATTTGTGAAAGTCCAGATATTTTCAAAGTTGCCAAACAGTGTTTAAAACTGTTCAAGAAATTTGTATGGAAAATTAGTTGGTGAAAGTTTGGAGCTCCAGTACTTCCCAGGTTAATAAAGGCGTGAATCATTAAGTTGTAAAGGCATTTGTTAGTGTTAACAACTAATAAAGGTATTACCAAGGAATCTTTGGGAGTGCCTTCTCCTGAGCCACAAAATGGGCCCCAAAAGAAAATTACTGATTTATTTTGTGCTGCCTCATCTGTGAAATCTGTTTGTAATACTATATCAACATTACTTTATTATTCCCACATAATCAGGAACATGTAAAGAAAGATGTACGTATTTTGATTATCAAGAACTGGAAATAATAATAAAAAAAATGACCTAAAATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039634-Zfp189:NM_145547:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.172 A=NA C2=0.077
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=FE(93.3=100)

							
A:
NA

							
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF097235=Zn-ribbon_8=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=3.9),PF097235=Zn-ribbon_8=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF139121=zf-C2H2_6=WD(100=4.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000036663





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000103324
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:101400011-101407928 
ALTERNATIVE
HsaINT1047320
(ZNF189)
Human
(hg19)
chr9:104162299-104170210 
Rat
(rn6)
chr5:64790673-64798333 
LOW PSI
RnoINT0167837
(Zfp189)
Cow
(bosTau6)
chr8:92752503-92760208 
LOW PSI
BtaINT0165002
(ZNF189)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr4:45570569-45570818 
DreINT0136215
(si:ch211-145h19.6)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"