MmuINT0178706 @ mm10
Intron Retention
Gene
ENSMUSG00000039634 | Zfp189
Description
zinc finger protein 189 [Source:MGI Symbol;Acc:MGI:2444707]
Coordinates
chr4:49522398-49531517:+
Coord C1 exon
chr4:49522398-49522482
Coord A exon
chr4:49522483-49529016
Coord C2 exon
chr4:49529017-49531517
Length
6534 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTTATTTACAAATATTTCAGATG
3' ss Score
7.72
Exon sequences
Seq C1 exon
GAGGAGTGGGGTTATCTGGATCCAGCTCCGAGAAGCCTGTATAAAGATGTCATGATGGACAGCTACGGAAAGCTGGTCTCGCTGG
Seq A exon
GTAAGAATGCACGCTTTTTCTAACTAAAATATCTAATAAGGTACTAACACTTAAACCCAGAATGCGTCAAGCAGTGTAACTGACACCAGCACTATTTTGTCCCAACCTTCTGATTCGGATCTTTCTACAACTCTGGTCTCCCTCGCTTCCTTGTTAGCAAAGGCTGGCTTTGGCAGCTTCAGAATCTCATTCCCAGACGGCTCTGTTGGCTCTGTACTTTCCTTCCCGGTTCATCTTCCCACGGCTCTCCTCCCACCCTCTTTTCACTCTGCCTTCTGGAGCCTGGGCTGCTCATCACACAGTGTTCCTTACCGCTCCGGCCTACACTGAAAGCTGGCACAGAGCCGAGCACACCACTTCTCTGGCAGACCTTCAAGTGGGGGCTGCTCATTCTCCCGGGTCCTCCTTCCTCTTGCTTTGTCTCAGGACTGGGAGGCAGAAGTTAAGTGTTCTCCCAGCTCTCCCAGTGCTTGTCCCAAAGCATTTATTTTTCCACCTTCCAGGAGCATGTCCTCATGTGGGGTCAGCAGTCCTGTTTCCCCCAGTGCTCCTGTTTATCATCATCTGTCACGACCCTCCCACTCCCACTACCTCCCACCCCCACCACCTCCCACTACCACCCCCCCACCACCACCACCCTGCTTAACCCAGTCATTGAGTGAGCTGCAGTGGGTCTTGATCCTGTAAACTTCAGGAACCCTGCTTTCCATACCATTGACTCTGGCCTTAATTTTGTTATGACAAGCAAGTCTGAAAACACAGTATCCTGGTCTCTGACCACTGTTGACAACTAAACAAAGAGCCAGAAAGGCTTGCTTCTTGCCCTGGTGGAGCCTAACTGCAGCTTACATTTCCGTCTTTCCTTCACCTTTCCACTTGAAGCAATTCATTCATAATGCATTTTCCGTCCCGTGATGTGTTCATGTCTCCCCCATGGTTTCAGTTCTCCCGACTTGTGAAGATCTCTTCTAATTGCCAGCATGTTGTCTGGCCACTTTGATACTATTGCTATACTTACTCTGCAAATTTCAAATCATGTATCTTTTATAAGATCTGTCCCTTCTGTCCCCTTCTACCTGATTCCCAAGCATCGCAGGATCAGTGTCCTACAAGTATCTAGTGAGGAGGGTTTTTTGTTTTCTTTTTGTTTTAGTTTGGTTTGGTTTGACTTCTTTGAGACGGGTTCTCACTGTGAGGCCCCGGTTGGCATGGAACTCACTCTATAGACCAGGCTGGGCTGGAGGATCAAGCGAGCCTAGGGCCTTGTTGATGCTAAACATCTTCTCTACCAGTGAAGTACAGCCCCAGCTCTTTACCTTAGTAACCCTTGTTCTAATATAGATTTATATCATGGTCTTCCCAACTTGGGGGAAAGAAAGAAACTTAACTGGACCAATGGCTCCCTCATGCTGTTTTCTGTGACTTACTACATTTCTTTTGCCCGTCAAGGTTTTATTAATTCCTGTGTATTTTATACAACTCTACCTTCTCATGTCTGTGATTTTTGTCTTGCCTGCTCAGACTCCTCAGACACATTTTGGACCTTATTCTACCTTTTTATGGATGTTTATGACTTTGTTTTAAGACAGGTTTTTGCTTCAAAGCCCAGGCTGGCTTCAAATTCACAATCTTCTTGCTCCAGTCACCCAAATTACTGAGACTTCAGGCATGCCCCCACTGCACATCTGTTTAAAGCTCTTTATAGCTTTTTTTCTGTTTGCTTGTGTTCCTTGCTCTCTATACCCTTTGCTCAGAGGGCCTTCCCTGTACTCAGATCATTGGCTGCCACCACTCGATGGTAAATCTCATCTATGAGAGGTAATATGGCACCCACCTACATCCTACGTGTGAATCTGACCTCTTCCACTGCCAGTTTCGTGACTGTGGGGAAATCTTTTCATTTTTCTTCAGTAAATGGAAATAGTAACAACATGTACTTCTTAGGTTGTTGTTTCTCTAACTGGGCTAATATATAGGTAAAGTACTTCAAATGCTGATCAGCGAATAATAAAAATAATGACAGTCTTAGTTGATGTTTCCTGTTTTACACCACCACCTCCCCCCCCCCCTTCATTTGATTGATATTTTTTCTTTTCACCTCTATTGAGTATCACATTTGCAGTTTTCTTCTTTTGGAAACAATGTAAGTTATGTCTGACAAGTCTCAGGAGTCTCCTCTGCACAGTGAAGTTCCCCCTCTTTACTACTTTGTCTTGACTGCCATTTCTATCATTCTGCAAACCATTCTTTATGTTCATTCTTAGGACACACTGGTCAGCACTGAGGGCAGTAACTGTCTTTTTCATTGCATGTTTCCAGCACTTACCATAAAGCTAGGCCTGAATCACATGCTGCTTGAATGGTCATGTTTCTGGGGAAGAACACAAGTTAATTTAAAAACTGTTGCTCGTGGTTGGATTATTGCCTCAACACTAAACTGCTTAGCACTAACTACACTAAGTTCTCACCACCAAGATGATTTTGTACTTGTATATGTTTAAAACTTTTGATGGTTTCTGGTACTTTAAGGGATAAAAATCTTAATTTTCTATCACACTGGAAGCTGAACAAGTTCAGCTCTTTTCTTTATTTAATATCAAGTACAGCTTCTCACTGTTCTTTATTTTACTCCTTCCACGGTCTCTTCAATAGATGCTGCTTCCGTTCCCTTGATGAGTGCTCCCTACCTTGATGAGTGCTCCCTACCTTGATGAGTGCTCCCTTAACCCCAGATCCCTGTGCTCTTCTGCTCCAATGTACTATTATCCACTTCATCTGATAGTTTTCAAAACATATCTCTTTATAGTATTGGCTCTTCATACCTTTTCATGATGATTTTTTTATCTTCAAATTTTTAATAGTAACCTTGATGATAAAGATAATAGCTAATCACTCAGTTCTTTGGTTGTTATTTCAGTGACTCATGCTGGATCTCCTAAGAACTGAGAGTCATTGAGCCTACAAAACCTTGAGCTCAACTTTTTTCTTTTCTTTGACCATGTTCTCTCCTCAGTTAAAGTACTCGTTCTATATGAGCAGTCACTAAACACTGTGCTAGGCCCTACAAATTCCAGCTCTCCATTCTCCAATTTTGTTAACCAAAAGAATTGTCCATCATATAATCTGTTAGGTAGCAAAATTATCAACTGTGGCCACAGGTCAAATCTGTCCCACAGTCTGTTTTCATAAATCAATTTTTTATTCAAACAGGCAAACCCACACCTTAATGCAATGTCATTAATACTTTTGAGCTATAATAGCAGGGATTATATAGCTAGAGTGAAAATAATGTCTGACCCTTTATGGAAAAAGTATAAACTACAGTTCTAAAGTTGATTTAGAGTCATGTTACCATCAATATCTTCTTAGCCATCAGATTATTAGTCCTATTTAGTGGAAGATATTAATTAATGCTAGTATAAGCCACTAAGGGGATTTTTTAAATAGGGCCATATATCTTATACAAAAACAGGCATGATTATAGCTGATGCGAATAGTACTGGAAGAAGTTAAGTCAGTCACAAGAAGTAAGGGATTGTGTGTATGGGTTTTGTTTTAGTCAAATTGAGCTGCTGTAATAAAGACTGTAAGCTAGGTGCTGTAAAAACAGTTGTTTGTCTCTGCTCCCCTAGATCTGTGAAGCACCACCAAACAGTCCATATTGCATCCTCATATTTTGCATAAGGAGAAATTATATATTTTCAATTTATGTTTAGAATTCTTTCCACAGTTCTGAGGAGCTTCCTAAAGGTCTCAGAGTTTACCATTTTGCTGAGGCGCAAGCCACACCTTTGCTCCTAGACTCTGTAGTATTTACTAGCTGATTTTTGTGGTAATGCACATATACCAGAAAAATCTTATTTTCTTGAATAAACAGCCAGATAAAGGACAGAGTAGCAATAGTTTCCAAGGAAACTTGTTGCTTACTATGGTTATTAACAAAAATAGTTAGCATTTAAGGAAAGAAAAACACCTAAATCTATTTGGTAAATTTTGCAAGGACTTTTTAGGGTAACTCCTTTGGGCCAAGTCCCAAAGACCCAAGGGCATCTTTGGTAAACAGTGTTAAAGAATGACTATTAAGTGACATCTACAAAAGTATGATGTCAAAGACTGGACAAGTGATTTCCCCATGTATTATATCTTACCTATCGAATAGAAAGATTGATTGAGGCTTGGGGGCCATATCATGACAAGTTTGATAATATCATAATCAAAAGGAACTATCACTTCATCTTAAAGTGATGTGGTTGGTAAATCCTCAGGTAATGACATGAATAGAATTTTATTTCTAAACATCTGGATCCATAAGGCTAATGTAGTGCAATGGCAACCTTAAGATAAATGGGTATCTGGTTATGAAAATTAAGGTAAGAAATAGATATTAGAAAGAAATCTATAGTTTCTTCAGATTAACAGAAAAAAGGGAGAAATCTAGGATTTGAGAATAATAAATAGTGGTGTAGATTAGAAATGAAGAGACATTAAGAGATGATGATGACGACGACGACGACGATACATTTAACTGGAAGGTATTTTGTATAGGGATATAATCCTGAGTAACAGCTACACAAAGCAGTTGTCAAAGGTAGATGAAATAATGAGGTAAATTCAGTAGAAAAAGCCAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTGCATCAAAAAGAGAAGCAGGGTTAAGAAATGGGCGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGAACAGCCAGGGCTACACAGGGAAACCCTGTCTCAAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAAAGAAAAAAGAAAAGAAAAGAAAAGGAGTGATCAACAATATTGGATGCTGCCGAATAAAATAAAGACTATAAAATTCACTGTGTTGTTGGAAAGTCTTTAGTAATTTGGTGAGAAGTTCTCTCTCTGTTCTCTGTTCTAGAAACAAAATATGCTTTGTTGTAGCTTACAGAATAAATCTAATAGGGAGAAGGTGAGGAATAAGAAATCCAACAGAAAGCTACAGTATAGGATTTTGTTTCGGGTAGCTTCTATCAAGAAAAAAAAGATTTCAGGCTCAAAATGGAGTAGGTCATGCCATGGTAGGAAGATGCCAATTGAAAGAAGAGGAAAGAACTGAACACCTGCTCAGAAGAGAGTGGGGTCAGGAGGGGGAGTGAAACACTGTTGGAAATGAGTGACATATACGTCCCCTGTTACAGATAGTTTTTATGGGTAGAGGTAGAAAGTTGAGGGACTTTACATTCTGCTTTTGTTGTGTTAAAGGAAGCAAATTAATGAAGTGAATCTGAGAGGAGATACTAGCCTAAGAAACAAGCCAAGGTTCTAGTAGTTGCTTAGGGGATGAGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTATGTATTTTAATTGGGGAAAGGTGGTATACACTAGCTTAGTAATGTCTGAAGTCATTAAAAAACTAGAAGACAACAAAATTGTGAGAAAGACAATTTTGGAAAAGGAACTTGTTTAGGGTCAAATATGAAATAGAGTTATCAAACAGCTGGAGTTAGAAAATCAGCCTGGTACTCTTTTATCATATAGCATTGTATTCTTTTCCCTTCACTTATGCAAGGGTTTGTTAGATGGTATGCTTTGTTGCAGATGATATCCTAAACTACCACAGATGACTTTTTTTCCCCGTTAGCTATTAACATAGTTATATTTTATTCTTGTGGATAGATAGCTCAATCCTTTATTGCACGTGCTGCTATCTACTTAATATGTTATCATTTCTCTTGATATTTTCTCTCCAGTTTTACTTAACGCCATTTTATTTGGTAGTGTTTTATGTCTCATCTTTGAATCCTGGCTGATAACTTAGTAAGTACATTGCATGCATTGGGTGGTCAGTCAGTAAATTCTGTTAATACATTAACTGTGGAATCCTCTGTTCTTTGTTTTCCATCCCTCTGAGGATCCTCTTTTTTGTCCTTTCCTCTCAGTTGTTGGTCTAGTTATATTCTAAAAACTTTCCAATGCTTGCTCATTCTCAATTTCCTTAACTTAATATTTTCTTCCTATGGTATCTTTTCTTTGATAGTTTCAAGGCTGTAAAAAAGAAAAACAATAAATCAATCAGATAACTAATGTTAAATAATACGCACAGTGACACACACCTATAGTCCTAGCTATCTTAAAGATGCTGAAACTGAATCTTATGAGCCCAAGAGTTCAGGCCAGTCTAGGAAATATATCTTGCCTCTTAAATAATTATTTGATAAAATATATATTATGAGCTAGTTTTAAAACTTAAGTAGTAAAAGAAAATACACATTAGCTATAGTAGGTTGAGTTAGCTTGATGACCGTGTTTTTCTAATAATTTCTCCTTTTCATTAAAGTGCTTGGCTGATACTTACACTTTTTATTTACAAATATTTCAG
Seq C2 exon
ATGTTTTAAACAGAAATAAAGATGAAGAGCCAACTGTGAAAGAAGAACTTGAGAAAGATATCGAGCCACAGGGTGTAATAGTTACAAGAATCAAAAGTGAAATTGATCAAGATCCTGTGGGTAGCGAAACCTTTGAACTTGTTGGTAGGTTAGATAAACAAAGAGGGATCTTTTTGTGGGAAATACCACGTGACTCTCTGAGTGAGGAACAGAAACTATTTAGAGGGCACACTAATGTCCGTAAGAGACCAACTTCAGAAGAGAAGTGTCATAAATGTGAAGAATGTGGAAAACGTTTTGTCCGCAAGGCCCATTTCATTCAGCATCAAAGGGTCCACACGGGTGAGAAACCTTTTCAGTGCAACGAGTGTGGGAAAAGCTTCAGTCGAAGTTCCTTTGTTATTGAACATCAGAGAATTCACACTGGGGAACGACCCTATGAGTGTAATTACTGTGGGAAAACCTTTAGTGTGAGCTCTACCCTTATTAGACACCAGAGAATCCACACTGGAGAAAGGCCTTACCAGTGTAATCAGTGTAAACAGAGCTTCAGCCAGAGAAGGAGCCTTGTGAAACACCAAAGAATTCACACTGGTGAGAAACCCCATAAATGCAGTGACTGTGGAAAAGCCTTCAGTTGGAAATCCCACCTTATTGAGCATCAGAGGACCCACACTGGTGAGAAACCCTATCACTGTACCAAATGCAAGAAAAGTTTTAGTCGAAACTCATTGCTTGTTGAACACCAGAGAATTCATACCGGAGAAAGACCTCATAAGTGTGGTGAATGTGGGAAAGCGTTCAGATTAAGTACATACCTTATACAACACCAAAAAATACACACTGGTGAGAAGCCTTTTCTTTGTATTGAATGTGGAAAGAGTTTCAGTCGGAGCTCATTCCTTATTGAACATCAGAGGATCCATACGGGGGAACGCCCTTATCAGTGCCAAGAGTGCGGGAAAAGTTTCAGTCAACTTTGCAACCTTACCCGTCATCAGAGAATTCACACGGGGGACAAACCCCACAAGTGTGAGGAGTGTGGGAAAGCCTTCAGTAGAAGCTCAGGTCTCATTCAGCACCAGAGAATCCATATCAGGGAAAAGACTTCGCCATTCAGTGAAACTAAGGAAAGTTTTGATCCAAACTGCAGTCTGGTTATACAGCAGGAAGTCTCCCCTAAGGAGAAATCGTACAAATGCGATGACTGTGGGAAAACGTTCAGTGTCAGTGCTCATCTTGTACAGCATCAGAGGATCCACACTGGTGAGAAGCCCTACCTGTGTACTGTCTGCGGGAAAAGCTTCAGTCGGAGCTCGTTTCTTATTGAGCATCAGAGAATCCACACTGGGGAGAGACCCTATCTGTGCAGACAGTGTGGCAAAAGTTTTAGTCAACTTTGTAATCTCATCCGCCATCAGGGCGTTCACACTGGTAACAAGCCCCACAAGTGTGAGGAGTGTGGGAAAGCCTTCAGCAGGAACTCAGGTCTCATTCAGCACCAGAGAATCCACACAGGAGAGAAGCCTTATAGGTGTGGAAAATGTGACAAAAGTTTTAGTCAACAGCGCAGCCTTGTCAACCATCAGAAGATCCATGCAGAGGTGAAAACCCAGGAAATTTATGAATGTGATGCCTGCGGCGAAGCCTTTACTTGTCAGATTTCTCTAATTCAGCATCAAAAGTTGCATATTATGTGGATGCAGTAAAATTAGGGATATTTTAATGCTTAAATCTGTGACTAGCTACCAAAGTGCAGTTTTAATACGGCCCAACGTGGGTCAAATATAGTGGTAAAGCAAATACTTGTTGGCTTCATGAAGAATAGTTTCTAAAGATCCTATGAATAGTGGGCAGTGCCTGTGGGGAACTGACTTGGCGATTACTAGTTGTTTTCATAGCCACAGAGATTTGATTTATCTAAGCCTCTAACCTTTCAGTAGAGTCGACTGGGCAAGGCATATGAGGAAAGTTCTGAAGGGCACAGTGAAATTAGTGTACCGAATAGGGAGCAACTGATCCTGGGAAGCTAGGAATAATTCAAAAGTCTTATGTTGCCATCTCCTGTAGTTGCCCTTCAGTTCTATGAAGTTTGACTATACGTGTCAAACCTCAGTGACTAAGCAAATGTAATTTGTGAAAGTCCAGATATTTTCAAAGTTGCCAAACAGTGTTTAAAACTGTTCAAGAAATTTGTATGGAAAATTAGTTGGTGAAAGTTTGGAGCTCCAGTACTTCCCAGGTTAATAAAGGCGTGAATCATTAAGTTGTAAAGGCATTTGTTAGTGTTAACAACTAATAAAGGTATTACCAAGGAATCTTTGGGAGTGCCTTCTCCTGAGCCACAAAATGGGCCCCAAAAGAAAATTACTGATTTATTTTGTGCTGCCTCATCTGTGAAATCTGTTTGTAATACTATATCAACATTACTTTATTATTCCCACATAATCAGGAACATGTAAAGAAAGATGTACGTATTTTGATTATCAAGAACTGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039634:ENSMUST00000107696:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(93.3=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF139121=zf-C2H2_6=WD(100=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types