DreINT0160163 @ danRer10
Intron Retention
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22661312-22661821:+
Coord C1 exon
chr3:22661312-22661548
Coord A exon
chr3:22661549-22661635
Coord C2 exon
chr3:22661636-22661821
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTCTGTGTGTTTCTGTTCAGGTG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GTGTCTCGTCTGCTGATTATGGGTGGAGCTAATGTGAACTACCGCACAGAGGTGTTGAATAATGCACCAATCCTGTGTGTTCATGCTCACCTGGGCTACCTGGAGACTGCAGCTCTGCTGTTGGAGTTTGGGGCCGATGTAGATGGTGTTTCAGAGAGCGGACTCACTCCTCTTGGCTACGCAGCCGCCGCGGGTCACCTGTCCATCGTCACCGCTCTCTGCAGCAAGAAAGCCAAG
Seq A exon
GTCAGTGATAACCAATAAGAACACGATATAATAGTTATCAGTCACTGAGGCTTCATCTCTGTCTCTCTTCTGTGTGTTTCTGTTCAG
Seq C2 exon
GTGGATCATCTGGATAAAAACGGTCAATGTGCACTTGTTCACGCTGCTCTGCGAGGTCATCTGGAGGTGGTGAAGTATTTAGTCCAGTGTGAGTGGAATACAGACGGACAACAAGTTGGATCCTTCAGCAAGAGTCATGCAATACAACAGGCCCTCATTGCAGCAGCTAGTATGGGCTATACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097:ENSDART00000112270:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(58.1=68.4)
A:
NA
C2:
PF127962=Ank_2=PD(39.8=59.7),PF136371=Ank_4=PU(20.6=21.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTTCAGAGAGCGGACT
R:
TCACCACCTCCAGATGACCTC
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]