GgaINT0143985 @ galGal3
Intron Retention
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2525351-2527718:+
Coord C1 exon
chr27:2525351-2525587
Coord A exon
chr27:2525588-2527532
Coord C2 exon
chr27:2527533-2527718
Length
1945 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
TGTCACCTTCTCTTTTCAAGGTG
3' ss Score
11.06
Exon sequences
Seq C1 exon
GTCAGTCGGCTGCTGATTTTAGGAGGTGCCAACGTGAATTACCGGACCGAAGTTCTGAACAACGCCCCGATTCTGTGCGTGCAGTCCCACCTGGGTTACACAGAGATGGTGGCTTTGCTCCTGGAGTTCGGTGCCAACGTAGATGCTGCTTCTGAGAGCGGCCTCACCCCCCTTGGGTACGCTGCTGCTGCTGGGTTCCTGAGCATCGTTGTGCTGCTGTGCAAGAAACGGGCCAAG
Seq A exon
GTACGGTGACTCCCTCTGCTCAGCTCTGCTGAGACCCCCATCTGCAGCACTGCATCCAGGCCTGGGGCCCCCAGCACAGGAAGGACGTGGAGCTCTTGGAGCGGGTCCAGAGGAGGGCTACTAAGATGATCAGAGGGCTGCAGCACCTCTCCTATGAGGAAAGGTTGGGGGAACTGGGCTTGTTGAGCTTGGAGAAGGGAAGGTTCCAGGGAGACCTCATTGTGGCCTTTCAGTACTTGAAGGGAGCATATAAACAGGAGGGGGAACGGCTGTTTATGAGGGTGGATAGTGATAGGACAAGGGGGAATGGTTTTAAACTGAGACAGGGGAGGTTTAGGTTGGATATGAGGAGGAAGTTTTTCCCCCATAGGGTGGTGACGCACTGAACAGGTTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCCGGTCTGCTGGTTGGTGACCCTGCACATAGCAGGGGGTTGGAACTGGATGAGCACTGTGCTCCTTTTCAACCCAGGCCATTCTATGATTCTGTGACCTCCTCCAACAGCTGGCATACAGTGTTCCACGCTCAGAGCATGAGCTGCAGGCAGGAGATGCCCTGCTTACTAAAGAACATCCCCTATCAAGTGAACACAGCATGCTGCTGTGGAAGGTTTGCTGCTTAAAAAGCATCTCCTGTCCAAATGTCACATTAGCACCAAAGGCAAGCAGCTCCGGGCAGTCCACTGTGGGTGTTCTGGAATGCAGGTCTGGTGCAGGAGCTGCCTAATTGTGCTGCACTAACGGCCTGCTGAGGTCTGTTGTGGAGAAGCCCTTCAACCTCACAATGCGAAATGGCAGCGCTGCTTTTGCAGCACAGAGCGTTCTTTAAATACCTCATTGAGACACATCTTCCAAAAACTTCTATCAGACTTGTCCTAGAAAAATACCCTTTGTTTAGCTCTCTGGTGAGCGTTTGGAGATCTAATTGGGTGTAATGAGTCACGTTTGAATACTTGGTTAGAGAAGAAAGTTGTGCTGCTATTTGAAGTGAAGCCTCCTGGAAACAATTAGTGGTTTCCCTATATGGTTAGCTTCAGTTCAAAAAGCAAAACGTGGGTTTGTGAAGCTGCAGTATGAACGTCAGGGCGACTGAGGGACTTGTCTGACCTTGCCCTGTTGCCTCTTATAATGTGAGGACAGGAGGAAATGGCATTATTTAATGTCACTTCTGCTGGGATATTTTAGGAGCGGAGTGAACCCCTGGCAATTGTTGGGGGATCTGCTCCTGCTCTGAGAACAGGAATGGTGGGGATAAACGCAGTGCAAACGGCTTGCCCAGGCTTTCCTTGAGTATCCCAAAGTGTAGCAGAGAAATCCCAGCTGGTGTAATCTGGTGAACTGTGCCCCATCCTGAGCAGCTGAGCAGAGGAGCTCCTGCAGTGCTGCCGAATGAAATCTGTTTCCCATTGACTTCTGCTTGCATCGGGTTCACATCAGGGTGTCGTGGCTGCAGCTGAGGCACTTCTGTCTCCCTTGAATGAATCCTGAGATGGTATCTGGGAAACAAGCTGCTTTCCTTTGTGGATTTGGGGAAGGGAGACGACAGCGTGTGTATGATTGCAAGAAAACACGATGGCTGTATTTTACACAAAGGGAAATGACACAAAGGGAAAACAGTTTTGCAGCCTTTGAGTCTGAAGACGACCATAGTAAAATGGCAGCTTAGCCAAAGCAAACACTTGTGGCCAAGTGGATGCCTCAGCCCGGGGCAGTGCCTATGGGAGGGCTGCTGTCTGCTCAGGGAAGGAACCGTCACCAGAAGAGTGCACATTTTGCACACGTGGCGATTCTGAAATCAGGGCTGGAAGCTGAGCAGGAAGGAAGATGTTTCACCCGAGGTTTGCCTTCGCTGCATTTCTGTCACCTTCTCTTTTCAAG
Seq C2 exon
GTGGATCACTTGGATAAGAACGGTCAGTGCGCGTTGGTCCACGCCGCCCTCCGAGGACACCTGGAAGTGGTGAAGTTCCTGATCCAGTGTGACTGGAGCATGGCTGGGCAGCAGCAGGGGGTGTTCAAAAAGAGCCACGCCATCCAGCAGGCCCTGATCGCTGCAGCCAGCATGGGCTACACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(57.9=69.6)
A:
NA
C2:
PF127962=Ank_2=PD(40.0=61.3),PF136371=Ank_4=PU(19.4=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAACGTGAATTACCGGAC
R:
TGGCTCTTTTTGAACACCCCC
Band lengths:
348-2293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]