DreINT0166801 @ danRer10
Intron Retention
Gene
ENSDARG00000011926 | tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040704-49]
Coordinates
chr21:11931168-11935501:-
Coord C1 exon
chr21:11935338-11935501
Coord A exon
chr21:11931516-11935337
Coord C2 exon
chr21:11931168-11931515
Length
3822 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TTGGTTTTATTTTGATGCAGCAA
3' ss Score
6.12
Exon sequences
Seq C1 exon
GTGTAATGGCCCAGCAGTGTGAGGTGTGGTTCTTGGACCGATCACTTTTCTGGCACTATCTCACCCCCTCCTTCACTGCCTACTACCGGCTTATGATCACTCATCTGGGGCTGCCAGAGTGGCAATATAATTTCACTCCGTATGGCCCCAGCCCACAAGCTAAG
Seq A exon
GTCAGCATTATTTATTCACGTCCACCTCATCAGAATCCCGGAATCCAATCAGAATTATTATAATTATTTTTTTTTACTGTACAACACAAAATGTCACTGAAGTTGGCAGACATATTCTGGATGAATTAATCAGAAGAACGACCATTCACATAATTAGTCAGCCATATTGATTAGTGTCTAAATATTAAAGTGGAAGTGAAGCAGTCAATCTAGATTACATTAAACTGGAAATCAATTTACAAAATAATGAAAATACTTATATATATAACAAACTCGATGTAATCATTTTGAAGACAAGGGCATGTTTTACTATAGCTTTTACAAGTGCATACAGTGCATCTGGAAAGAATTGATATCGCTTCACTTTTCCACGTATTTTTATTTTACAGCCTTATTCTAAAATAGATTAAATTCCTTTATTTCCTCAATTCTACACACAATACACCATAATGACATGTGAAAAAAGAGTTTTAAATTGTTGCAAATTTGTTAAAAATAAAATAACCTGGAAAAAAAACAAAAATCACACATACAGTACATAAAGGCTAATTTATACTTCTGCGTCAAATGCACGCATATGCAACAGCGTTGACGCATAGCCCTTCGGTGTGGCCTTCGGCGTCACTGACGTGCACCTCTCAAAAAATGCAATGACGCGTAGCGCAAGCTCTGTGATTGGTCGGCTTGGTAGCGCTGACGAGTCTGGGCGGGACAGAGAGCCGCGCGAATGGTGCGAGCTGGGCGTGAGCCCAATGGAGCGATTGTTTACAAGTTTAGAGTCCCGTGAAGGAGTTCCGGATGGAAAGTTTTGTTTTGTGTTTACCTCATAGTTAAAGTTGTTGCACGTCCGCCGGTTCCTGCCTCAAAATGAGCGAGTTTGAGCCACTTGTACATCCATGAAGTGTTTAGGAAAAGCAAAACAGCAGCGAAGAAACTCGACACAGAGGAACATTAACACCTCACTGCCAACTAACATTTCGGAAATGTATTGCAGACCAACAGAGACAGCGCGCAGAAGTATAAATGCACAGCTACGTGCGTTGCCTGCGCTGATGGTTGCGCCGGTCACTTGACTCAGAAGTATAAACCAGGCTTAAGAATTCACAGCCTTTGCCGTGAAGCTCTAAATTGAGCTCAGGTACATTCTGTTTCCACTGATCATTCTTGAGATGTTTCAGCACCTTTGTTGGAGTTCACCTGTGGTAAATTCAGTTGATTGGAAATTATTTGAAAAGGCATACACCTGTCTATATAAGGTCCCAGGTTTGACAGTGCATGTCAAAGCACAAACCAAGCATAAAGACAAAGGAATTGTCTGTAGACCTCCGAGGCAGGATTGTCTTCTGGCACAAGGCTGGAGAAGGTTACAGAAAAAACTTCTGCTGCTCTGAAAGTTTCAATGAGCACAGTAACTTCCATCATTCATAAGTGGAAGATGTTTGGAACCACCAGGACTCTTCCTAGAGCTGGCCGGCCATCTAAGCTGAGTCATCGGGGGAGAAGGGCCTTAGTCAGGGAAGTGATCAATAACCCGATGGTCACTCTGTCTGAGCTCCAGCGTTCTTCTGTGGAAAAAGGAGAACCTTACAGAAGGACAACCATCTGTGCAGCAATCTGCAATCAGGCCTGTATGGTAGAGTGGCCAGACAGAAGCCACCCCCTGCCTGGAAATTGCCAAAAGGCATCTGAAAGATTCTCAAACCATAAGAAAGAAAATTCTCTGCTTTAATGAGACTAAAATTGAACTCTTTGGAGTGAATGCCAGGCGTTACATTTGGAGAAAACCAGGTACCGCTAATCACCAGGCTAATACCATCTTTACAGTGAAGCATGGTGGTGGCAGCAACATGATGTGAGGATGTTTTTCAGCAGCAGGAACTGAAAGACTTGTCAGGATAGAGGGAAAGATGAATGCAGCAGTGCACAGAGACATCCTGAATGAAAACCTGCTTCAGAGTGCTCTTGACCTCATTCTGTGGCGACGGCTCATCTTCCAGCAGTACAATGACCCAAAGCATACAGCCAAAATATCAATGTAGTGACTTCACAACAACTTGATAAATGTTTTTGAGTGGCCCAGCTTGAGCCCAGACCTAAATCCTATTGAACATCTCTGGAAAGATCTGAAAATGGCTGTACACCGTCACTTCCCGTCCATCCTGATAAAGCTTGAAAGATACTGCAAAGAGGAATGGTTCAAGAATTCCCAAAGACAGGTGTGCCAAGCTTGTGGCATCATATTCAAAAAGACTTGAGGCTGTAATTGCTGCCAAAGGTGCATCAACAAAGTATTGAGCAAAGGCTGTGAATACATATGTACATGTGACTTTTCAGGTTTTTTAATATTAATAAATTTGCAATGAATGTAAAAAAAAAAAATTCTTTTTTCACATTGTCATTATGGGGTATTGTGTGTAGAAGTTTGAGGAAATAAATGCATTTAATCCATTTTAGAATAAGGCTGTAATTAAAAAAAATATGTTATGAATATGAACACTTTCCAGATGCACTGTATTCTGTGTGTATGAGTTACACTTTTTTATACTGTACACATCCTGAAGGTTGTGATGTTTTCAGCATCTGCCGTGTCATTATGTGAAGATGTGAACACATTCACTTAATTTCCAGAGCTTGCTTAATTTCCAGAGTAGAGATTCCTGCTTTTAAAGCACTACTTCATGAAGCCTTATAATCTTTATGAATATTTTGTTTCAAACAGATGTTCAAAGTTTGAATAAAAATTGGCAAGGTCATGTGATTTCAGTAAATATTGTTGCACCATTTCTGTTCTGAAACATTTCAGTATTTGTAATCACATTATTCATGCAGGTTCACTCAGATGAGTTTATAAAAAGTTTTAAAAGTTGGTTTAATAGGATATTTGTAAAACAAAAAAAGTATCATTTTAGTTGAGTCCCTAGCTGTCCTGTTAACCGGCCCACGATAAAACAAAATGACACAACATCAAAACATGACCTCTCTGTGCAGACATTTTAAATATGGACCTATCGCATGCTTTTTTAAATGTCTAATTATCTTGTTTAATCCCGCTCTTTCGCAGCACCGTACGATAGAATTCCGCATGCTCAAACTCTACTGTGACCGTGCAATAACATTTGAAAAGGCCCATTTTAACGAGACTTTTGTAAAACAGAGTATCATTTAAGTTAAAAGTCTCATGTTGTGCGGTTTAGCAAAGCCCACAAAAGAACAAACAGAAAAAAAATTTAAAAATATATAAATGAGGCATATTATGTTGACATTTAATATTTAATGAAAGTAGATGATAAACTTGGTGCATATGATAGGTTGTACTTTCAAAGCCTGTTTTAATCAGTTTTGCTGAGATTTTGTTGCTTTTACATGGTTTTAACCAGCAGGTGTCCCTGATGAGGTGTTTCAAATGCTTTGAAACAGTGAATCATTTGCAGATGCGAAGCAATTGGTTTATTGATTTATGTGAATCGCAATCTGAAAGTTAATTCATTAGAGTTTTACTGCTTTATTTGAACATGAATGTGTCATCATTATGAACACAAAGAGTGTAAAGCAATTTATGAACATTCACAATGAACAAACATCGTTTAACTTGAAGAAATAGATTAATGCTGAACTGTAGAATGCACTTCACAGTGTAGCACTAACAATTATATACATTTATCATTCATTTTAACAAGAATAAAATGTATTTCTTATTCCTTCTTTAAAAAAGTCCTAATTTCCTTCATAAAGGAGTGTTGTTTAACAGTAGTGTATGTTCATAGTTTCAGTTTGTAATCAAACCTAATCCCTAAATCCTGCATTGGTTTTATTTTGATGCAG
Seq C2 exon
CAATGGGCCGCTCTTTACCAGCCCCTGACCTTTCACAGTGACCCCCATCTCGATACATCCAGTGAGCCTTTTCTGAACAAACTGGACCCAACAAAGGCATTTCGTGGCAAAGCCAAGCCACCCACTCCAAAAAAGAAGCAGCCAGCACAGGTGCCAGCGAGCGGTACGGGCACAGCCAAAGGACAAGGGCTCTCCGGGAGACACAGTGTAGCCAAACGATGACCCAGTGTAATGCTGACTCTTCTTTTGCCTCACACTAGCAATTTAGCTTCACTTAAGCTAATCAGTCGATGTCCAAAAAAGTCTATGTCTGTCTGTGTACAATATTTATTAAAGATGATGGACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011926:ENSDART00000031658:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.616
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=PD(19.1=52.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]