GgaINT0065683 @ galGal3
Intron Retention
Gene
ENSGALG00000002429 | C18orf10
Description
NA
Coordinates
chrZ:6645388-6647995:+
Coord C1 exon
chrZ:6645388-6645548
Coord A exon
chrZ:6645549-6647449
Coord C2 exon
chrZ:6647450-6647995
Length
1901 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCCACCATCCTGTATTTCAGCAA
3' ss Score
6.9
Exon sequences
Seq C1 exon
TTGTGTCCCCAGACACAGAGATATGGTTCCTAGACAGAGCTCTGTATTGGCATTTCCTCACCAAAACCTTCACAGCCTACTACCGCCTGCTCATCACTCACTTGGGTCTCCCACAGTGGCAGTATGCCTTCACCAGCTATGGAGTCAGCCCTCAAGCCAAG
Seq A exon
GTAAGACAGTAGAATCCAGCTCGTCAGCATTCTGTGTTAATTATAGATTGGTAAAACATCTTTCAATCTTTGACAGTCTGTAGGCTTAACTAGACCTCCCTAGTGAGCTATGGGAGGGGCCATGAGCCCTTCCCTCCTATCACATTAACATTTACATTAGTGAATTCACTAACATGGTGTTAAATCTACTTTTCTCACCTTAATTCATCTCTACCTTTCAGCTCTGTTAGCAGGTGGTGGAAGCTAATTAAGTGCTTGCTTTCTGGACTTGGAGGCCAGTGTCCATTTCCATGACTACTAGAGGAGATGTAAACTCATTTGTTTAAGTGGTATTTGTCTAGATCAGCTTTCTAGACATAGCACCAAACAAGATCCTACTGCTGATTAGCTGGAGAGGTAACTCCAAGAATACATTACACAGAAGCCCAGAGGAGAACTATGAACTTCAGCCTAGTAAAGAATACCAATTCTTCTCCTATCCTCATCAATCACAAAGGGATACCCCGATAAAAACAGTGCCCAGAAGAGCAGATTAAATGCCAGCAATCACAGAAGTACTTGTAGGAGAGCTCCAAGCACAGACCAGTCCAGACCCTTTGTACTACTAAAATAGCCATTCTGTTCTGCCAGTAGCCTGCTTAGAGGTTTCTTTTCATTCCTCTGTGCTTGACTGGGCCTTCAACATTAACCCAGCTTCCACCTTGTGTGAGCTGATGCAGTGCATGCTAGCAAGGCCTGACAGGTCTTGTTGAGTGTCCTGCACTTAACCCACACATGATGGCTATATTACCAGCATGACATTCCTTGTTCCCTGCCTTGTTCCTGTGTGTGCATCAAAATTATTCACTAAAATCACTGTCAGATTCCCTTCTGTCAGTTTGCCCCTTTGCATTTCTGGTATTTTCCCTGTCATACTGTGCTCTACTTTCTTAGTCAGCGCTGTGTGCATAGTGTATTAGCATTTGTCTGTGCTCTGCCTTTTTGTAGTTTTCATGCTAGAATATTTCATTATATTCAGTGTATTCACAAAACTTAGCAAAATTATTCATACACTCTCTAATCATTTGTGGCCTTTGTTAGTTTAAGTCTTCCTAGTATGTTAACCATTATCATTTGTAAAGGTCTTTAGGGATGGTATATTAAAGCCCTTTGCCATTAAGCAGTACATGAACAGATTGCTATTTACATTTGGTATTGATCTTCTGTTTATCTTCTTATATACTTCAGTGAGGATGGTCACAGATTTGTAATACTTTAACCCCTGCAGTTTTATTTCATGACTTCATCAATGGAAAACTGATAGGAAAAGCACTGAGATATGGGAACTTTAGGGCATAATTGTGGGGCATATGGGAACAAAAAAAAAAAAATCTTGTGGTCACTTCTAAACATTAAATCAGGCTGAAGAGAAACAAACACAAAATCCTTTGTGTCAAAAGTTTAAAAAAAAAAAACATAATATCGTATGTATGAAGACAGTGAGGTAGGCTATCTTTTGAGAAGTGCAGCTAGTTTGGTTATACTTCATAAGCACTTCTTCATTCCAGGTTTTTAATGTTTTCTGCTTCTCTGAGCGTGGATGCAAGTGGCCTAGTTTCATCTCCTCCCTTTGCTTTTCCTCGTATGATTTAAGTCAGGAGTTGCTCCTGATTGGAATTACACTGCAAGAAAAATAGTGTCATGTTTGTTTCTGGTTCTCCTCTTCCGTGTCTGGAATGTGAGGCAGCCCCAGGGCTGTAGCTATATCCCTATCACAAGGCACTCTGCACTGTCCTGTAAACTGCAAATTGGTATGCAGATTATGATTAAAATCAGGGCTCTAGGATGAGAAGAAACAGGCAGAAAATGTCTAATTATAGCCTGTATTTAACCTACTCCTTCTCCACCATCCTGTATTTCAG
Seq C2 exon
CAATGGTTTAACATGTATAAACCCATAACAATCAACACAACTCTTCTCTCTGAAGAAGCTGATTCCTTTGTAAACAAGCTGGACCCCAGTAAGATATTTAAAAGCAAGAACAAAACTCCAGTGATGAAAAAGAAACAACCCTCCCAGCCAGCAGGTGTCCAAAAGAGCAACACTAGCATGCCCTCCACGAAGACTTCCTCACTAGCTGGGAATTCTTCAAGGAAGCGAGACCCGCAGATCTGACCCTGAAAAAAGCAAGAAGCTTTGGTGTTTTCTGATGCAGTATCTCAGTGGTTCAAGCCAAGCTCCATTTGCGTGAATAGGATGCAGGATTTGCATGAAATATAACCATAGAATCACAGAATACCCCAAGTTGGAAGGGACCTATAAGGATCATCAACTCCAACACCTGGTTCTATGCAGGACCACCCAAAACTCAGCCATATCGATGAGAGCACTGTTCAGACACTTCTTGAGCTCCGTCAAGTTTGGTGCCATGAACACTGCCCTAGGAAGCCTGTTCCATGCCCACCACCTTCTGGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002429:ENSGALT00000003820:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.537
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTATGCCTTCACCAGCTA
R:
ATGGAGCTTGGCTTGAACCAC
Band lengths:
354-2255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]