HsaINT0021545 @ hg38
Intron Retention
Gene
ENSG00000134779 | TPGS2
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
Coordinates
chr18:36794106-36798609:-
Coord C1 exon
chr18:36798449-36798609
Coord A exon
chr18:36797051-36798448
Coord C2 exon
chr18:36794106-36797050
Length
1398 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTCCAATTCTGCCTTACAGCAA
3' ss Score
8.91
Exon sequences
Seq C1 exon
CATTAGCAGAAGACACTGAGATCTGGTTCCTGGACAGAGCGTTATACTGGCATTTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAATATGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAG
Seq A exon
GTAAGGGAGGAACACCTGCCATTGTAAACTATGGTATATTCCAAAATCTACTGAGGAAATGGTTACATTGCAGGTTCCCAACTTCCCTATCTGATTCAGGAGATCTAGGGTGGGGCCCAGGAACCTGCATTTTCAATAAGCAAGACAGATGATTCCAATGGACAGCCTCACTTTACTCATCTAGTTAAGTGGTTCCCAAACTTGACTGATTCTCAGAATTAACTGGGGAGTTTTATTTTTAATGAAATTCTGTTGGATAGTTTATGTCCCATGACTTGTTCTGGGTTGGCAGTACATGCACCCAGGAAGAGTGAAAAGTCAGATTCTCACTCCCCTGTTCTCCAAGTGTGCATCCCCAGTGGCAGCTGCTATTACGAGTTTCCTGTACGCCCTTCCCAAGATACTCATTGCACATAAAGCATGCATGCACACTTTTGGTGTTCCTTTTTTCTAAATCTCAAGTGTAATGTACTGTCAACATGATTCTGCATCTTGTTCTTTTCACATAACACTCCATCTTGGGGCTTATTCCCTTTCAGTACATTTAGGGCACTTGTCCTCTTCAGTGGCTACAGAGTATTCCATTGTGTGGGTGTGCCTCATTTATATTACAGGTCTGGTCACCATTTCAGGCATACAGATGCCAGGTATACAACCTGGTTTGAAAACACCAAGTGTGGCTGGAAAAACTTTTGACTAGAATGAGCTCATCTGGGCTCCTTCGTGGTGGTTTCTTGCAGCTATAAATTAGCAGCAAATTAGGAACTCAGCTCCAGCTCACCTTACTGTGTATGTATTCATCTAGTAGGCTTCATTTTCTTCAAATGTCACATAATTATAACATTTATCTGGTCAACATTGAGAGGCGGCTGTGATTTAAAAGGTAAATAAATGTGGATGCCCTTTGCCCTCAGCTGCCAAAAAAAAAAAACAGTAGGAAACAGAACACCAACAAGATACAGCATCCCTCAGCAGAGGCCCACACTAGCCTCTGTCTCCTGCCTTTCCTGGGGGAATGGTGCTGCCAGAATCCACCTGATGGGGAGTAGCTGGTTTGAGGGCAGAACAATAGACGCTGTCCTCTAGTGCTTTGGGATCTAGCATCCCAGGCTCAGGACTCACTAAATCAGAAGGAGGTGTGCTCAGATTCTTAGTTTTCATACTGCATTTATCTTAAAGGTCCTGAGACCTCATAAAGCAATGTGTCTATCTTACCAGAGGTTGATGGGATCTGTTATCACCTCCACTTAAAGGAAGAGCAAATAGATTTTTAGGCAGTTTTTCATGAAAATGTACCTCTGCCTCCTGTTCCCAACTCTCCTGCATCCCACAAAAAGAGCACACAGAATGGCATTTTTCCTTTGAATTGTGACCTTGTCTTCCAATTCTGCCTTACAG
Seq C2 exon
CAATGGTTCAGCATGTATAAACCTATCACCTACAACACAAACCTGCTCACAGAAGAGACCGACTCCTTTGTGAATAAGCTAGATCCCAGCAAAGTGTTTAAGAGCAAGAACAAGATCGTAATCCCAAAAAAGAAAGGGCCTGTGCAGCCTGCAGGTGGCCAGAAAGGGCCCTCAGGACCCTCCGGTCCCTCCACTTCCTCCACTTCTAAATCCTCCTCTGGCTCTGGAAACCCCACCCGGAAGTGAGCACCCCTCCCTCCAACTCCCTACCAGCTCCAGAGTGGTGGTTTCCATGCACAGATGGCCCTAGGGGTGACCTCCAGTTTTGCGTGTGGACCGTAGGCCTCTTTCTAGTTGAATGACCAAAATTGTAAGGCTTTTAGTCCCACCGACATTAGCCAGGCTCGTAGTGAGGCCTCCAGAGCAGGTTGTGCTGTCCCCTGCCTCTGGAAGCAATGGGGAATTTGGAATCTTGTGTAAGTGCCCAAATAAGTCTGAGTGCTTTCCTCTTCTTCAACACTCAACCCTCAATCCCTTAGCACTGATTGATTAGAGAGGTCCCCCAAAGAAACCACTGGTTTTGACCCATGAAGCATTAGAACTGCATTGTTCATTCAGGAGCCACTAGTCACATATGACTATTTAAATTTAAAGTAAATTGTATGAAAAATTCATTTCTTCAATTGCATTAGCCACATTTTGAGTATTCATGTGGCTGGTAGATTCTGTATTAGCACAAAGATATGGAACATTTCCATCACCACAGAAAGTTCTGTTGGACAGCACTGCATTAGAATATTTTCATACTGCTCTTCCTCAATTAATTTTTGTTGTTAATGTTGATGTCTTCATTGGATGGGTCATAATGTTCCATGAAACCTCTCAAGTACACAATTGTATGTTCTTTGTATCCCTTACCACAAATATCTCGCTCTGCTCATTTCTTTTGCAGCTTCCTATAAAGTTTGTCTTCCTCATCAGTTTCCAGTGAAGTTTCTTGCTTCCAGTTTTGTGTTATGATGTTTGTACACGTTCCACAATTATCTTCCTTATTAACTTTTTAAAGAAGGTGTACTTCTGCTATACTTTATTCTTACCATTTAAAAACAAAAAATTCCCAAACATTGTTTTGCACAACTCTTCATAAAGAAAGAGTTTTAATGGTGCCAGACACTGTTAACAGAAGCTTTCCACCTGCTCTGCCTGCCTCTTCACAGCTCTGAGTTGTCCAGCCTCACTTTGCCTGGTCCCTGGCCATCCTTAGGACAAGCAGTCTCCTGCTTAGAACAGGGTGGGCTTCCAAGAGTTCCTTTGGAAGCAAGTTGCCTGTAATTCAGAAATCATTTTCCCATTGACATATGGGGGAACCTCTAGCCCACATATGCTTAATATTTGACACAAGATAAATCTGACATACCTACTACATTTAATGAAATTTTTACAGAGAAGGTTGCTCAGATTTTCAATTAGGAATGCCTATTTATTTCCTCCCTCTACAGTCCTGGCTGTGGGCAGAAGCAAGGCCTTCACCCTGCTTCCCAACAGGGAAAGTGGGGAGTCACCCACCTAGCCCCAAGTTCTTTGGGTGGCTGCAGTTTTTGTACTGAAGTCCCAGAGGTTAGAGAATTAGGAGTTTTGAGGAATGAGGTGCAGGGGCCTCTACCATCTGCACACTTCAGTCCCAGCTGGCTCATTCTCTTTCCTGACTTCTCTCTACCCCGGTGATTGGCCAGACTTCCTTCCTTTGCACTGTCTACCTGCTAATCGACCCAGGGTTTCCCTCTTCCAAACCCACTGGGGAACTAAGAGCAGTCCACAGGATTCTCCACATGCACTTTTGCTCTGAAACATGTTTATTTTGATTGTTGACAATAGTGATAGATATTCATGAGAAAGCGCCTTCGATATCTCCTCCACCTACCACTTTCCATAGCCCCTGAGGAAAACCAAGGTGAAGAGTTAGCCTTCAAGGATCAGGGCAAGCTCTAACTGGCTGCTTCCCCATATTTGTAATAGTTCAAAGTCTTGAAATATCAGCGCTTAAGAGTCTTTGGGAGCATAAACTGAGCTTCGTATTAACAGCTTCTTCATTTGCTTTAAAATAGCGAGACCTCTTACCTTTTCAATCCCAAAACTAACCACTTATAATTCAGTGTGGTCATTTAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAACCATAACATGACTGTCACATATTCTCTAGGAGACATTTTGGCCCTTTTAGTTGTTTAGGTTATTATACTTCAAGGATTTATAAATGTGCAACAATTCATGGAGTGGCAGAAAAGGATATAGAGAGACCAAGTTGTTGAGGACAATAGCTGGAGTTTAGTCTTCCAGAAGTATTTTTCTTGCCAGAATTGATCAAAGGAAGAGCCAACGGCACTGGATAGGAGATTCTAGCATTTGGCTGCTTCTCCAAGACAAGCGAGGTTAGAAGGGAGTTGAGAAGTTATGTCATCTTCCACTGCAGCAGATACCCCTTTTTTAGTACTTGGAGATCCCCCGAATCACAGCATTTCTAAATCAGCCCTGGATTCCACAAGTGAAGCAGCGGAGGAACCAGGAGGTCAGCGGTGTCACTCAAATCTGTGGCAATCAAGTGGGAGTTCTCAAAAGGCTATCAAAGGAAGGGGGTTATGATAAGGAAAGGCTCAAGACCTGCCTCAGAAGGAGTGAGCAGGGAAGAGCAGGACTGACTCCACTCAGTGCAGGATCCAGTACAAAATGAAGATGTGAGGCTTTTGTGCAAACAGCAGGAAAACATTACCTTTACAGGTACTAAAATGTAATGTTTTTCCTTTCTTCCATAGTGTCTTTCTCAACTTGTTATGGCTGTGTTTTTTATTTGCTACTTAATGCTGTTCTAACTAAAAACTTAAATGTTAAATTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779:ENST00000334295:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCCTGGACAGAGCGTTA
R:
AAGTGGAGGAAGTGGAGGGAC
Band lengths:
343-1741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development