HsaINT0021545 @ hg19
Intron Retention
Gene
ENSG00000134779 | C18orf10
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:24561]
Coordinates
chr18:34376034-34378572:-
Coord C1 exon
chr18:34378412-34378572
Coord A exon
chr18:34377014-34378411
Coord C2 exon
chr18:34376034-34377013
Length
1398 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTCCAATTCTGCCTTACAGCAA
3' ss Score
8.91
Exon sequences
Seq C1 exon
CATTAGCAGAAGACACTGAGATCTGGTTCCTGGACAGAGCGTTATACTGGCATTTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAATATGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAG
Seq A exon
GTAAGGGAGGAACACCTGCCATTGTAAACTATGGTATATTCCAAAATCTACTGAGGAAATGGTTACATTGCAGGTTCCCAACTTCCCTATCTGATTCAGGAGATCTAGGGTGGGGCCCAGGAACCTGCATTTTCAATAAGCAAGACAGATGATTCCAATGGACAGCCTCACTTTACTCATCTAGTTAAGTGGTTCCCAAACTTGACTGATTCTCAGAATTAACTGGGGAGTTTTATTTTTAATGAAATTCTGTTGGATAGTTTATGTCCCATGACTTGTTCTGGGTTGGCAGTACATGCACCCAGGAAGAGTGAAAAGTCAGATTCTCACTCCCCTGTTCTCCAAGTGTGCATCCCCAGTGGCAGCTGCTATTACGAGTTTCCTGTACGCCCTTCCCAAGATACTCATTGCACATAAAGCATGCATGCACACTTTTGGTGTTCCTTTTTTCTAAATCTCAAGTGTAATGTACTGTCAACATGATTCTGCATCTTGTTCTTTTCACATAACACTCCATCTTGGGGCTTATTCCCTTTCAGTACATTTAGGGCACTTGTCCTCTTCAGTGGCTACAGAGTATTCCATTGTGTGGGTGTGCCTCATTTATATTACAGGTCTGGTCACCATTTCAGGCATACAGATGCCAGGTATACAACCTGGTTTGAAAACACCAAGTGTGGCTGGAAAAACTTTTGACTAGAATGAGCTCATCTGGGCTCCTTCGTGGTGGTTTCTTGCAGCTATAAATTAGCAGCAAATTAGGAACTCAGCTCCAGCTCACCTTACTGTGTATGTATTCATCTAGTAGGCTTCATTTTCTTCAAATGTCACATAATTATAACATTTATCTGGTCAACATTGAGAGGCGGCTGTGATTTAAAAGGTAAATAAATGTGGATGCCCTTTGCCCTCAGCTGCCAAAAAAAAAAAACAGTAGGAAACAGAACACCAACAAGATACAGCATCCCTCAGCAGAGGCCCACACTAGCCTCTGTCTCCTGCCTTTCCTGGGGGAATGGTGCTGCCAGAATCCACCTGATGGGGAGTAGCTGGTTTGAGGGCAGAACAATAGACGCTGTCCTCTAGTGCTTTGGGATCTAGCATCCCAGGCTCAGGACTCACTAAATCAGAAGGAGGTGTGCTCAGATTCTTAGTTTTCATACTGCATTTATCTTAAAGGTCCTGAGACCTCATAAAGCAATGTGTCTATCTTACCAGAGGTTGATGGGATCTGTTATCACCTCCACTTAAAGGAAGAGCAAATAGATTTTTAGGCAGTTTTTCATGAAAATGTACCTCTGCCTCCTGTTCCCAACTCTCCTGCATCCCACAAAAAGAGCACACAGAATGGCATTTTTCCTTTGAATTGTGACCTTGTCTTCCAATTCTGCCTTACAG
Seq C2 exon
CAATGGTTCAGCATGTATAAACCTATCACCTACAACACAAACCTGCTCACAGAAGAGACCGACTCCTTTGTGAATAAGCTAGATCCCAGCAAAGTGTTTAAGAGCAAGAACAAGATCGTAATCCCAAAAAAGAAAGGGCCTGTGCAGCCTGCAGGTGGCCAGAAAGGGCCCTCAGGACCCTCCGGTCCCTCCACTTCCTCCACTTCTAAATCCTCCTCTGGCTCTGGAAACCCCACCCGGAAGTGAGCACCCCTCCCTCCAACTCCCTACCAGCTCCAGAGTGGTGGTTTCCATGCACAGATGGCCCTAGGGGTGACCTCCAGTTTTGCGTGTGGACCGTAGGCCTCTTTCTAGTTGAATGACCAAAATTGTAAGGCTTTTAGTCCCACCGACATTAGCCAGGCTCGTAGTGAGGCCTCCAGAGCAGGTTGTGCTGTCCCCTGCCTCTGGAAGCAATGGGGAATTTGGAATCTTGTGTAAGTGCCCAAATAAGTCTGAGTGCTTTCCTCTTCTTCAACACTCAACCCTCAATCCCTTAGCACTGATTGATTAGAGAGGTCCCCCAAAGAAACCACTGGTTTTGACCCATGAAGCATTAGAACTGCATTGTTCATTCAGGAGCCACTAGTCACATATGACTATTTAAATTTAAAGTAAATTGTATGAAAAATTCATTTCTTCAATTGCATTAGCCACATTTTGAGTATTCATGTGGCTGGTAGATTCTGTATTAGCACAAAGATATGGAACATTTCCATCACCACAGAAAGTTCTGTTGGACAGCACTGCATTAGAATATTTTCATACTGCTCTTCCTCAATTAATTTTTGTTGTTAATGTTGATGTCTTCATTGGATGGGTCATAATGTTCCATGAAACCTCTCAAGTACACAATTGTATGTTCTTTGTATCCCTTACCACAAATATCTCGCTCTGCTCATTTCTTTTGCAGCTTCCTATAAAGTTTGTCTTCCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779-C18orf10:NM_015476:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.469
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=PD(18.5=51.9)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCCTGGACAGAGCGTTA
R:
AAGTGGAGGAAGTGGAGGGAC
Band lengths:
343-1741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)