MmuINT0005398 @ mm10
Intron Retention
Gene
ENSMUSG00000024269 | Tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1913898]
Coordinates
chr18:25136037-25140606:-
Coord C1 exon
chr18:25140446-25140606
Coord A exon
chr18:25139140-25140445
Coord C2 exon
chr18:25136037-25139139
Length
1306 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACTCTATTTGTGCCTTACAGCAA
3' ss Score
8.51
Exon sequences
Seq C1 exon
GGTTAGCTCATGACACTGAGATATGGTTCCTGGACAGAGCATTATACTGGCACTTTCTCACGGATACCTTTACCGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAGTATGCCTTTACCAGCTATGGCATTAGCCCACAGGCCAAG
Seq A exon
GTAAGGAGAGAACCCTGCCATCTCAGAATCTGATATGTACCAAGACTATTCTGTGGAAATGGTTACCTTCCGAATTCCCCATCTGCTTTAAATAGATCAAGGGGTAGAACCAATATTTTCAATAAGCAGGACTAAGTGACTCCAGTGTTTGCTAATAGCCTCACATGATTTAGATTTAATTAAGTAATCAGGATCAACTGGAGTGTTGTTTTTAATTAAAATGTTACTGAGGGCTTGGGCCTAGTCAGTCATTATTTGGATTGACAGTACACACACTTAGAAAGATTGACAAGTCTCCAGGTATGCATCCCCATGGCCCGGCATAGTTGTCAGTGTAGTGTGTATGTACCTGAGATACTCAGTCCATGTGAGGCATTGGTAGCATGTTTCTTTTTATATTTTTACTAACACAGATATAGCAATTCTGCACTCTTGGTTTTGCCTTAGTGCTCCATTGCGGAGTACCCATAGAGCTGTCTTCTATATGTTACAGATTTGGGCATCATTTCAGAGATTTATAGAACGTGCCTTGAAAATGCCAAGCGCTGGCCAGAACTTTAGACCAGAGCGAACTGGTGTGGTTTAAAGAAAAATCACAGTGATTTCTTATAGCACTTAGTCATCAAAAACTCCCACTGTATCTATACTAGCTGGCCTCATTGTTCTCACAGATTTTCATAATTACAGCTTCCATGTAATGTGGTGTGAACTGGTTTTGATCAAATCATGGCAAAATATGTGGCAGCCCCTTTCCCCAATAGCTATAATTATTAAAAAAACAAAAACAAAAACAAAACCAAATCACTGCAGGTATAGAGTACCAGCACACCGCTTCCCATAGGAAAGTTCTGCACGGACCTCTGTTGCAATACCCATACTGGGCACCGTGTGCATTGATGGCAAGCAGGACAGTGTCCTTGGCAGGCTCACTAGTTCTAAGGCACCAATAAGTATACTTGGCTCCTTAGTTCTCATAGTACCTTTATTTTAAAGGCCTTAAAAAGCACCTTATGTGCTTGACCAAGGGTTGATGGCATCCCTCACCACTTACTGTTCCAGTGCTCATAAATTTTCAAGGCAGTTTTTCATAAAAATGTGTATAAGTTCAATATTACATCACTGAAATGTACTGGACCAAAAATGTTTTATATTTTACAGCATTTTCAATTTTGAAATAATCGCATGTACTTTACCAGTTGACACTGAAAAAAAATGTAGGTTAGTGATAGTTAATTTGTAATGTCTGTACTGTCGCCTGCTCTCCCCCATTTCTCCTTCCAACTGAGACTCTATTTGTGCCTTACAG
Seq C2 exon
CAATGGTTCAGTATGTACAAACCCATCACCTACAACACAAGCCTGCTCACAGAAGAGTCCGACAACTTTGTGAACAAGCTAGACCCCAGCAAAGTGTTCAAGAGCAAGAACAAGATTTTAATCCCAAAAAAGAAAGGGCCTGTACCACCTGCCAGTGGTCAGAAAGGGCCTGGGCCCTTACCTCCTCCTACCTCTAAGCCTACCACAGGCTCTGGAAATCCTGTCCGAAAATAAGCATTCTATCACCTCAGTAATATCCAGACACAGATGGCCCTGTGGCAGCGGCATTCTCCTGAGAGACCAAAGCCTTAGGCCTTTGTTTCCACTGTCATTAGCTAGGGGCTGGGACGATCACACTGAATTCTCCTCAGGAGTTCCTTCCTCTGTAGGTTGTGACAACCTCATCTCCAAAGCCAACGAAGACTTTCAGATGTACCTGAGCTTTCTTATGTCTGTACCCAATCCTTAACTTCTTAGCAGTAATTAGAGAGGTCACCCTCCCAAATAAACCCATGGTTTGACTCATGAAGCATCAGTATCGACTAGTTATGTGACCATCTCAGTTAATGAAAATTGCACACCTTCAGTTGCATTCACCACACTTCAGCTATGCACCTGATGGTAGAGTCCATATTGGACAGCACAGAAAGGGGAAGGTTTTTGTCACAGAAGTGTTTTGGACAACATTGCATGTGAACACGTTCATACTGTCCTTCAGATACAATAACGTAATGCCTTAGTTTCATACGCTTTATGTTTTGAGAAAACATTTTCAAAGACAGTCTTGTGTTCTTTACAACCTAGACCAGGAATGCTTAAAGGTGTGATCCCTAGACTTAGAATTGTGCACCAAAGTCACTGGTATCATGTGGGGATAAGATGATTGGATTCCAGTTCTGATCTGCAAAATAAGAATTTCCAAGAAAAATTCCAGGTGTCAGGGTTTTCTTTTTAAGACAAGGTCTCACTATATAGTTTAGGCTGACCTATAGCTCACACACCCTATATAGCTTCCTGACACACACACACACACCCTGTCACTAACGTTTTAATTACAGATGTACAGTATCATGCGTAACATTGGATTTTTAGTCAATTTAACAGTACTTCTGAGTTTGAAACTTTCAGCTTAAGATCTCAGTGGTTTCAAACCACAAAGTTTCTTTGTAATTGGGTAAAGCACGTATAACTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTGAAACAGGGTTTTTCTGTGTAGTCCTGGCTGTCCTGGAACTCATGGAGTTGTGGCTGCTAAATGACTTAGTGCATAGAGTTAGTTATCCTGTCCTTCCTTTGTAATGTGACCCTACGGTTGCTAATTATGACCTTCCTGCTAGCAGCTGTGATCTCTTAAGTCGTTCATTTTTTGCTTGCAAGACACCAGTTGGGTTCTCACTTGTGCCTTTATACCTGTCCTTTCCTTGTGAGGTTCAGCTCTAGTCTGCCTCTACTCAAAGCTCAGTGAAGCTCCAACTCCCCTAGGTGAGCAGTGATTTTTTTGTGCTTCTCCAGAAAGCCATCCTAATCAATTCTGCATTAACCCAAATAAATGTGTCATATTTTAGGGCAATAAATTAGAATGAATGAGTAAAGTTGTGAAAATGTTTAACTTTAAAAATTGAGAAGACAATAATTGCCTTATTTTAGAGTCTGGATATCTTTCACTCATCTTACGGTCTGTGTCACAAAACCATCAAAATGAAATAGGTTACACATGAAGCCATGAATGCCACTGGTCTTTTCTGCACCCAGAAACTATGTTGTACCCAGATACTACCTAACTGGATATCCCACCAATAACTGTCTTGATAAGGCTCTAAAAGACCAAAAAGTAACTCGTGAGACATGGTGGGATGTGAAACTTCTTACCCTGTATCTAGGAAAAGTTCTTCAACACCATTGATGCTGTTTCTTCAGATGTAAAATGAAAATTTATGGAAGGGCTATAAAACTATTAAATAATGCAAATGGAGTACACATGGAGATGCTTTCAGTAAGCAACAGCTTTTAAAATAGCATTCAGAAAGTCCATTTTCTCCCCATGAATTACCTAACCAACAGAACCAATTGCTTTACCAGATGATTTTTTGACAAAATTGATTATTTTAACACCTATCTTTACTGTCTATTTCAAAGCCATTAGCTTTCTTATAAAATCGCAAAGACATTTCATTCCTGAAGCAATTTGGTACTTTTGTGGTGTAGTTACCTCTCTGATAAAATGATTTCTAATCAAAACTAGAAATAGCTAAAGAATGGGGGATAACTGAAATTTAATTGGATGACAGCCTCCCACAGCTTCTGTTAGACCTCCTGAGGAGAAGGATCAAGGCTCTCATTTTCCCAACTGACCACCCAGCCCTGTCACAGAGCTACCTACAAACCTGGCCCTTAGTGCATAGTTTGTTCTACTGTGTTTTCAGGACCTGATGGCTTAATACACATAAGTTTACCCGTGTGTATTTCTGCAGGCCAGAAGTTCAATGTCAGTTTTATAGAGCCAAAATCTAGTTGTCACTGGGCCAGGACTTGGGAGGCTCCTATAGAGTCTGTCCCTGCTTCCTCCTGCAGATTGTTGTTTGGGTTCATATCACTTCAGTCCTGTTGCTTTCACTTCGTCTTCTCTTTCTCCAAATCTCTTCTGACTGTCCTTTATAAGGACACTTATGATTGGATTTGAGGCATGTCGGACACTACAGGATGATCTTCTCACACCTGCAAGGAATCCTTACAAAGGAATTGTACATTTCAGAGATTAGAACCGGAGGCCCCAGAGATGTTGAGTCAATGTATTACAGTAGTGTTTGCTACTTCACCATTTCAAGGGACTGTGGATATAAATGATTGTTTTGAAGGCCATAACGGATCTATAAGCCACTTTAGAGCTGGGAAACTAAGCTGCCGTTTGTACCCCTGCTCATCTTCTCTACATTGTGTTCAACAATGAACCTTGAAGAAAATAAAACCCAGGTCTCCAGCCTTCCCCAGCCCCGTGCATGCGCATTCTCCTTCACCCCCAATTCCTTTTGAGTAAGTTACTTGTTAAAATAAATCCTTAAGGTTCAAAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024269:ENSMUST00000115817:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACTTTCTCACGGATACC
R:
TCGGACAGGATTTCCAGAGCC
Band lengths:
342-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types