DreINT0169095 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50159637-50160039:-
Coord C1 exon
chr9:50159929-50160039
Coord A exon
chr9:50159804-50159928
Coord C2 exon
chr9:50159637-50159803
Length
125 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGAT
5' ss Score
2.85
3' ss Seq
TAAACCAAACTCATTGGCAGATC
3' ss Score
3.47
Exon sequences
Seq C1 exon
ATCAAGTGCTGGACGCCATTCAGGAGCTGGAGATGCTGAAGGAGAGAAGAGACGTTTCACTTTGTGCGCTCATGGCTCTGGTTTATGCCCACAAGAAACGCCCAAACCCTG
Seq A exon
GTAGATCTCTTACATCTGTTTATGAAAAATAATACCACATTATGATGCCTTTTCTTAGGAGTTGTCTTGTAGTATGTAGGTTATAATGTGAGTACTAATGAATAATAAACCAAACTCATTGGCAG
Seq C2 exon
ATCGTGAAATCATACAGGATCTGGATGGACGGGTGAAGGAGGAGAGGAAAACGGCGAGTCCTAAAGCACTGTATTACGCGGGCATGCTGCTGTGGCTTCTGGGCCGCAATGACAAAGCAAGAGAGTATGTGGACAGAATGATCAAGATCTCCAGTGGCTCAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0771912=TPR_2=WD(100=60.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCAGGAGCTGGAGATGC
R:
TGAGCCACTGGAGATCTTGATCA
Band lengths:
257-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]