RnoINT0157586 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52352064-52356358:-
Coord C1 exon
chr3:52356248-52356358
Coord A exon
chr3:52352231-52356247
Coord C2 exon
chr3:52352064-52352230
Length
4017 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATATTATTTTCCTTCCTCAGATA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GTAAAGCTCAAGAAGCCCTTCGGGAGTTTGAGGCCATTAAAAATAAACAAGACGTGTCACTGTGTTCCCTGATGGCGCTGATGTATGTCCATAAAATGAGCCCCAATCCAG
Seq A exon
GTACAGCATTTAAGTGTAGCATTGAGATAGATTCCATGTTCTGCTTACTGCGACTTAATGATTTTTAGTTTTCTATCCATGGTGCTATATATGTAATGTTTTATCTTCCTGGCCAGAGTATAAATTCATCCGTTTCATGCTGCTTTTATGCATCCTATGACAGTTATTTCAATGGTGCATAGCAATGGTCTGAGTTAACAGAGTTGACTGTGTAAATGTTAGCAACTGTTTCACAAAGCAATGAAAGGACAACCAAAGAAGAGTGACACACACAGACTGTGCAAATGTGTAGCAATGTGCAGTTTCTCTCCTTAGACAACGTAGTAAGCTTCATGAGGACTTTGATAGTTCCCATTGTTCATAGCTCCTGAAAAATGTTCAGTAAATTTTCATTGTGTCGTACTTGAGACATGTGGCTATATTATGGAAGTAACATGATTTTCATTGTAGAGTAGTTGGGACGTATGGCTTTATTATGGAGAGAACATTATTCTTGGTAGTATTTGAGATGTAAGACTATATTATGGAAGGAACTCTGTTCTTTATAGTAGTTGGGATTCATGGCTATCATGGGGATGGAATGTTACTTAGGTAGTAGTTGGGACATGTGGATATATTGTGGAAGGAATGGTCTTTAAAGTTGAGTTGCATTGTGTTAGCAAGTAATATAAGGTATGACTGAGAAGAGAAGAGAATCCAAGCTATAAGTAACTTAAAACTATACGTGTATGTCCAGTAACAATTAATAGCACTGTAAGTATTTTAAATAATTAAATAAGCTGCATGTCATAGAATGAGCTTTTAAATATTGGAAACACTTTTATCTTTAAAAAATTATCACATGCCTCTTTCATGCCAAGCACACATACACAGATAAAAATAAAAATAAAAAAACACTGTTTGACAAGTAACCAGTTATGTACCTTCTGTTAGGACTGTGCTAAATACATTTCCAGGATACAAAAGAGTTATAGTGAGTGACCCACACATCCGTGCTTCAGAATTGGATTGTAGAATTGGGTAGACTGAGATCTAGTCCTGACACTGACCCTAGCATTTGTATCATTTTAGAATATTACTGGGTTTTTAAATATACATTTGATTAACAAAAATAATTGCCTTTCTTAGGAATGACATAAACTGCCCAGCTAGTACATGACTAAGTGTGCCTTTGGAATCTGAAAGGTGGATACTCTGATTGTATACCAGACTCTTTTATTTCTTTTTTCATTTACTTAAATATAACTTTTTAAACTTAAACTTAAATTTAAAAGATCATAATTATCTGTCTGTGGGTCAGGTGAGGGGCTTACACACACCATGGCATGTTCAACTCTTGCCTCCTCCACTGTTTGAGGCAGAGTTTCCTATGTTTCTGCCACAATAGGAATTCGAGGTTATCTGATCCACAAGTTTCCACATGATTTTGCTTGTCCATGTCTTGGTTTTCTGTTACTGTGACAAAACGCCGTCACCAAAAGCAACCTGGAGAGAAAATGGTTCGTTTCATCTTACAGATTGTAGTCCATCATCCAAAGAAGTCCTGGCACAAACTCAGGGAGAAATTGATGCGGACGCCATGATGGAGTGCTGCTTACTGTCTTGCTCCTCGAGGACTGTTCGGTCTGCTCTTTTCATGGCCTTGGGTGCCACCACCCACAATGGGCTGCACCCCATCCAATCCCATACCAATCGTTGATCAAGAAAATATCCCTCAGACTTTCCTTCAGGCAATCTGATGAGGGCAATTTCTCAATTAAGTTTTCTTCCTAAATGACTCTAGCTAGGGTCAAGTTGACATAAAAACTAGCCAAGGATCCCTTGTCAACCCGACACTTAAAAGCATCATTCTTGAACTAGAACCTTTTTTTCTTGTTTGTCCCAAAAATGATATGCTAATATTGCTAATGTTATCACAATGCAAAAACATTCCAACTTCTAAAAGTTCCTTAGATTTTAAACATGTAAACAGTTTAAAAGTTCAGTCTCTTCAAAATACTCAAGGACTTAAAATATTAAAGGTCTGAAAAATTCCACAATCTATCAAATTCAAGTGTCTCTCTAGAATGCTAAAGTTACTTTTAAATATCCAAGGTCTCATAACTATGGGTTCCTATAAGCTTAAAAAACAAGTTAATCACTTTCTTACTTCAAGAGGGAACAACCAAACTTCAGCAGTATATATGATGAGTGTCAGTGTCTGAGATCACTCATGACTCATGCTTTTCTGGGCTTCTCTGCCTCCGCTATTTCACAGCACATATACCTTGTCTCATAGGCTCAGCCCAGTTTCATTCATCCCTGCTGCTGTTCTTGATTGTCATCCTATGCCATTAGCATCTCCAAAATGCTGGGATCTTCAGTAAAACTAAGCCATACCTTCACTAGTAGCTTTCCAGGGCTCTCTTCAAGGACTCCAAACTGGCCACCTGGTGGCAAGCCTCAGTTTCTCCCTATGATGCTTTTATACCTTCAAAACCATTAAGACCTGGGAGACTGTTACATAGTACCAAGTTTATCTGTCTCCTTTGGACCACAGATTTCTGTGTGCTGCTAATGCCAAGGAAACCCTTCCTAGAAGATCTAGCATCTTGCTCCAGTGATGCTGGACTCTTCTAACTTAATCATCATCAATTTGCCAGGTCCAGCTTCTCAGCAGTGATTGTCCCAGTAAGTTGAAAGTTTAACTTCACTGGTGCTTGGCTACTGTCAGTCGTGTCTGATTTTTAGCCCCTGCTGACTAGAACCACAGATTCTCCATTTGAAATATCAAGCTGCCTTGGTAGAATCTTTGAGGGACTCTCTAACTTCCTTCGAGTTCACAAGTGAGGCCTCAGTCGTCTGTCCTGCTCTCAGCATTAGCGTCTATATTACCATAGAACAGCCCACCGAGCTCTGAGCACTCAGTGGCTTTTCCAAAGTTCGAAAGGCTTTGCACAGTACTCGCCAAAACACCATGATCAGGTCTGTCACTGCAATACCTCATGACCTGGTGTCAATTTCTGTTATAGGTAGGGTTTTCATTGCTGTGACAAAACACTATTTTGCAAAGCACTTTGGGAGAAAAAGGGTTTATTGCGCCTTATACTTTGTAGTCCATTATCCAGGAAAATCACGGCAGGAACCAAGAGACAGGAACAGATCCAGAGACCATGGTATTAGGGCAGAAGGGTGGAGAGGGTGATTGCTCCTCATGGCTTGCTCAGCCTGTTTTATTAAGAGTATATAGGACCACCAACCCAGAGCTGGCATCAGACAGTTAGCTTGGCCCTCCTGTATCAATGATTAATGAAGAAAATGGCCCAGGGCTCATCTTGTAGGGTCATTTTGTCAATTGAGTTTCCCAAATGACGGTAGTTTAATGTTAAGTTGACATAGAACACAGCAGCAAAGTCTGTCTCACATCTTGCTGCAGGAGAACTGAGGTTACATATGCACGCCACCAAGTCTAGCCTTCCACGGGTCTGGTAAGGTTAGGCATGCAGGGCACCACATCACCCCTTTGACATGAGTTTGCAGATCAAATCCCTGATACCAAGCTTATGCTGGAAATCCTTTTACACACTGAGCCACCTTAGCCAGCCCAATTTTTCATGTACTTTTTAAATTCTAATATGCTACTCGATCCAGTTATTAAACAATTTGTATAAGGGACAAGTTGAGTGTATGGATCTGCTTTTCAACTCTACTTAATGACATGTACATGTTTTTTCTGAAGGAAACTTAATAAGCCGATTTAAAAGGGTTAGTTTTTAAAACCAACAAACTCATTAATTTTGTATTTCTATTGGACTCACTTGGTTAAATAAGACATTAGTAAGGTTCCTTTTTTAATTCATTTTTAAATGAACAGCAATACTGTCAGTATCTAGATGGCATGCGCAGCGTGTTCTGTTTGTAATACTGCTGTCCTTGAAAGAATAAATGACCTCCACACGTGGTTAGGAATCTGACCTACCATACACACCATCTAGGATTTAATTTTGTTTTAGGTTTAATATTATTTTCCTTCCTCAG
Seq C2 exon
ATAGAGAAGCTATCCTGGAATTAGATACCAAAATGAAGGAGCAACGTAAGGAAGCCGGACGCAAAGCCTTGTACCATGCAGGCCTGTTTCTGTGGCACATTGGTCGCCATGATAAGGCGAGAGAATATATTGACAGAATGTCAAAAATGCCACATGATAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134241=TPR_12=PU(54.3=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]