GgaINT0048233 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19156175-19157052:+
Coord C1 exon
chr7:19156175-19156285
Coord A exon
chr7:19156286-19156885
Coord C2 exon
chr7:19156886-19157052
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTGACATTTGTCTTCTCAGATC
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTGATGTCCAAGAGAGTATTCGACAACTGGAATCCATTAAGAACAAACAGGAGGTGTCACTTTGTGCAATGATGGCGCTGATCTACGCCCACAAAAAGAGCCCTAATCCAG
Seq A exon
GTATGCCCATTAAAACAATAATGGTTTATATTTTTAACAGCTGTATGTTAAGACTTGAAAGTTGTAGATGAATTCTACCTAACTTTAAGCGATATACCCCAGCTTTGCTTTTAACATAATATCTAGTGTTTGGAAGTTTATCAAGATTGTAAATAAACATACCAAAACACAAAGCTGTGAAGAGTTAAGTCTAAATTTTTAAACACTAAAAAACTGATTTACCCACCATGGTGAAAAATATTTTATGGAGAAAGAAATAAAAATGAGGTTGCTTTCAATTCTTATTTCCTGTTCTCTTTCTGGTATCAGTCGTGAGCAAAACTGCAAGTTTATTAAGAAGTCATGGAAGCCAGGCCATTAATGTATTTCAGGTTACCCTGTTGAATGTTGAATGAACGGGTGAAACAGCTCTGATTAATGACTCTGGTCTTATTTCTGTCTGCATGGACTAATGCTATAAGATAGTAAATATATCATGTATTTCGGTGCTTTCTCATTGCTATGACTTTTTCAGAGTCAGACATTTGATTTTAACAGTTCTTCATAAAGGACCAGAAATTAATGTGGGTGAAAGAGAATATTTGACATTTGTCTTCTCAG
Seq C2 exon
ATCGGGATGCTATTCTAGAGTTGGATACAAAACTGAAGGAGCAACGTAAAACAGCAGGACAGCAGGCTCTTTACTTCGCTGGCTTATTTTTGTGGCATCTTGGTCGTGAAGACAAAGCCCGTGAATACGTTGATAGGGTGATCAAAGTTTCTAATGGAGATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCCAAGAGAGTATTCGACA
R:
TCTCCATTAGAAACTTTGATCACCCT
Band lengths:
271-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]