MmuINT0167070 @ mm9
Intron Retention
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66087452-66090061:-
Coord C1 exon
chr2:66089951-66090061
Coord A exon
chr2:66087619-66089950
Coord C2 exon
chr2:66087452-66087618
Length
2332 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATACTATTTTCTTCTCTCAGACA
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTAAAGCGCAAGAAGCCCTTCGGGAGTTTGAGGCCATTAAAAACAAACAAGACGTGTCACTGTGTTCTCTGATGGCGCTGATGTATGTCCATAAAATGAGCCCCAATCCAG
Seq A exon
GTACAGTATCTAAGTGTAGTGTTGAGATAGATTTTCCATACTCTGCTCGTTTTAACTTGACGATTTTTAGTTTTCTACCCATGGTGCTGTTTATGTAATGTTTAATCTTCCTGTCCAGAGTGTAAATTCATGTGTTTCATGCTGCTTCATACGTCCTATGACAGACATTTCACTGGTGCATAACCGTGATCTGAATTAACAACGTTGACTGTATGTGAATATGTTAACAACGGCTTCACAAAACACGAAAAGGGCAACTAAAGAACAGTGGCGTGCAAAGATTGTTTGTGTGCAGATGTGTAGCAATATGCAGTTTCTCTCCTTAGACAATGTAGTAAGCTTCTAGAAGACCTTGATGGTTCCCATGGAACACAGCTCCTGAGAAATGTTCAGTAAATCTTCATTGTGTTGTACGTGAAACATTTGACTGTATTATGGAAGTAACATTATGATTTTGATTAGGTAGTAGTTGGGACATATGGCTTTATTATAGAAGGGACATTATTCTTGGTAGTAGTTGGAAGATATGGCTATATTATAGAAGGAACTTTGTTCTGTGTAGTAGTTGGGGTTCATGGCTATCTTGTGGGTAGAATGTTATTCTAAGTAGTAGTTGGGACATGTGACTATATTCTGGAAGGAATAGTCTTTAAAGTTGAGTTGCATTGTGTTAGTAAGTAATGTAAGCTATAGTTGAGACAGAAAAAAATATCTATAAGTAAATTAAAAGTATGTGTGTAGGTGTATGTCCAGTAACAATTAATAGCACTGTAAATATTTTAAATAATTGAACAAGCTGCATGTCTTAGAATGAGTTTTTAAATATTAGAAGCATTTTTTATTCTTAAAAATTATCACATGCCTCTTTCATGCCAAGAACACATACATAAACAAAAATACATACATACATACATACATACATACATACATACATACATACATACAACACTGTTGACAAGTAACCAGTTGTGTACTTTCTGTTAGGACTGTGCTAAATATGCTTCAAAGAGACCAGAGTTGTAGTGAGTGATCCACGCAGTGTGCTTCAGAATTGGATTGCAGAGCTGGGTAGTTTGAGAGCTAGTCCTCACTCTAACCCTGGCATTTGTATCATTTTAGAATATTTCAGGGTCTTTTATATACATTTCTTTATCAAAATAATTATGTCTTTCTTGGAAATGACATAAACTACCCATCTACTAAATGACTAAGTGTGTCTTTTAAGTCTGAAAGGTAGATAATCTGATTGTATGCCAGAATTTTTTATTTATTTTTTATTTACTTAAATTTAGCTTAAGTTTAAACTTAAATTTAAATTTAAAACCTTCACTTTTATTTGTCTGTCTGTCTGTGAGGTGAGAGGCACTAGGACAGGGACTCGAGGGCCTTACAGATACCATGGCATGTTCAACTTTTCTCTCCTCCATTGTTTGAAGCAGTTTCTTAAGTTTCTGCCACAGTGGGAACTCCCAGGTTATCTGACCCACACGTTTCCAGGTGATTTTTGTTTACCTGTGTCTTGGTTTTCTGTTACTGTGTCTAAACACCATGACCAAAAGCAACTTGGAGAGAAAATGGTTCATTTCATCTTACAGATTGTAGTCCATCATCCAAGAAAGTCATGGCACAAACTCAGAGCAGAAGTTGATGCCGAGGCCATGAAGGAGGGCTGCCTATTGTCTTGTCCCTCGTGGACTGTTCAGTCTACTCTTTATCACCCATGAGCACATGCTTCGGGTACCACCACCCACAATGGGCTGGGCCCCATTCAATTCTGTACCAATCGCTGATCAAGAAAATATTCCACAGACTTTCCTACATGCAATCTGAGAGGGCATTTTCTCAATTAAGTTATCTTCTTTCTAAATGACTCTAGCTAGGGTCAAGGTGACATAAAAACTAGCCAAGATCTCTTGTCAACCTGACACATAAGAGCTTCATTCTTCAACAAGAATCTTTTTTCCCCGTTTGTCCCTAAGATAATATGCTAATATTGCTAATGTTATCACAATGCAAAAAATATTCCAACTTTTGAAAGTTCCTCAGATTTTGAAAATGTAAGCATTTTAAAAGGGTTAGTTTTTAAAACCAGCAAACTCATTAATTTTGTATTTCTAATTTGTACTTACATGATTAAAAGACATTAGTTTTGCTCATGCTTAAATGAACCAGCAATACCATCAGCATTTAGATGCCATGTTCAGCCTGTGTTTTGTTTATAATAATGCTGCCCTTGAGAAAATAACAAACTTCCATACCTGGTTAGTCATCTGGCATAAACACGGTCTGGGATTTATTTTATTTTAGATATAATACTATTTTCTTCTCTCAG
Seq C2 exon
ACAGAGAAGCTATCCTGGAATTAGATACCAAAATGAAGGAGCAACGCAAGGAGGCTGGACGCAAAGCCCTGTACCATGCGGGCCTGTTTTTATGGCACATTGGTCGTCATGACAAGGCGAGAGAATATATTGACAGAATGTCAAAAATGCCACATGATAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-Ttc21b:NM_001047604:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: