GgaINT0048233 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21132934-21133811:+
Coord C1 exon
chr7:21132934-21133044
Coord A exon
chr7:21133045-21133644
Coord C2 exon
chr7:21133645-21133811
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTGACATTTGTCTTCTCAGATC
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTGATGTCCAAGAGAGTATTCGACAACTGGAATCCATTAAGAACAAACAGGAGGTGTCACTTTGTGCAATGATGGCGCTGATCTACGCCCACAAAAAGAGCCCTAATCCAG
Seq A exon
GTATGCCCATTAAAACAATAATGGTTTATATTTTTAACAGCTGTATGTTAAGACTTGAAAGTTGTAGATGAATTCTACCTAACTTTAAGCGATATACCCCAGCTTTGCTTTTAACATAATATCTAGTGTTTGGAAGTTTATCAAGATTGTAAATAAACATACCAAAACACAAAGCTGTGAAGAGTTAAGTCTAAATTTTTAAACACTAAAAAACTGATTTACCCACCATGGTGAAAAATATTTTATGGAGAAAGAAATAAAAATGAGGTTGCTTTCAATTCTTATTTCCTGTTCTCTTTCTGGTATCAGTCGTGAGCAAAACTGCAAGTTTATTAAGAAGTCATGGAAGCCAGGCCATTAATGTATTTCAGGTTACCCTGTTGAATGTTGAATGAACGGGTGAAACAGCTCTGATTAATGACTCTGGTCTTATTTCTGTCTGCATGGACTAATGCTATAAGATAGTAAATATATCATGTATTTCGGTGCTTTCTCATTGCTATGACTTTTTCAGAGTCAGACATTTGATTTTAACAGTTCTTCATAAAGGACCAGAAATTAATGTGGGTGAAAGAGAATATTTGACATTTGTCTTCTCAG
Seq C2 exon
ATCGGGATGCTATTCTAGAGTTGGATACAAAACTGAAGGAGCAACGTAAAACAGCAGGACAGCAGGCTCTTTACTTCGCTGGCTTATTTTTGTGGCATCTTGGTCGTGAAGACAAAGCCCGTGAATACGTTGATAGGGTGATCAAAGTTTCTAATGGAGATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134241=TPR_12=PU(54.9=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCCAAGAGAGTATTCGACA
R:
TCTCCATTAGAAACTTTGATCACCCT
Band lengths:
271-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]