DreINT0169135 @ danRer10
Intron Retention
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22917726-22919142:+
Coord C1 exon
chr17:22917726-22917923
Coord A exon
chr17:22917924-22919030
Coord C2 exon
chr17:22919031-22919142
Length
1107 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTTATGTGTTATATTTATAGGCG
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTTCTGGAAATCCTGGTGCAAGCAGTAGTGGATAATCTAACCGATCACCGGGGCGAACAGGCCTCCATTCTCAGACCCAAACTCCAGGAGCTTTTGGGCAGAGTGTCGTCCCGCTGCAGCACAGACGCACAGATATGGAAACAGTACGCCCGTCTTTATGGCGATGGACATAGCAACAATGCAGAAGACAATGAAAAG
Seq A exon
GTCAGTTTCTTTTTTATTATTAATACTTTTAATATTATTAATTAATAGAAAATACAGATGCGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTATTTAGCCCATTCCAGAATTCACACATTACTGTCTGGTTAGTTTCTGTCCTCTACTTATGCTAAAAAGAGAATAATGGTCCAACATTCCTGACCATTATCACCAATAAAGCCTAGAAAAACAGGGCATCAGTATATTGTAAACTGACAGGTTTAAATATTCCTTTCCAGTTATCAAAGAAATAATTTGTTCCTTAATTATAGTTTTGTAACTATTAAATTGTTTGAAATTCAAAATAGGAACATATACATCAGTGTAAAACCTATAAATGGTGGAAAAACATATTCGGTATAATTGTGTACCTGGGTCTCCACTTTTGCCATGGTCTCTTTTGGCATTAACAAACTTATCCCTCAGGTTTTTCCAAGCCTTTTAACAAAAGCTTTCTTCTTTTCCCATTGCTGTTGCAATTTCTAGCCAAGAATTATTGGTCATCTGATTATCCCTATGATCATGCATGGTCAGATCATAAAGATGTCTGTACAGTCATATCCATTTCAGACAAAATCTCTTCAAAATGTTTCATATTTATTTTCAAATCAAATGCTGCGCTGCGCGAACTGTTCGCTTGAGTCTCAAAAAGCAATGTGCGTTCCGCCAGTCAACATCATGTCATGAGCACCCAAAGCGAACCTCCGCAAACACATCGATGATGTCATATTCACCGCTCACACTCAAGCAAACTAGAGGACATGTCGAGTATGAACCAGGCTTTAATGGGTGATACAATGTCTACTACGTATTGGATCTGGTCCAGCACGTCATCGTGATACAGACAGCAGCAAGGACATCTTGTTTTTTTTTTTGTGGTCAACTTGATTATTTTATGCTCAATTTACTTAAATTTGTAAAAACAATTAAGTTAACTTAATCTATTTGTGTTGGGACAACATGAAGGAATAGTCTGGAACCCAGCATTTTTTAAAGTGTACGTAAAAGAGAGAGCTTTAATTTGTTGTTGCTTGATCACCTTTCATCTGGATAGCTCTAAGTGTTTTATGTGTTATATTTATAG
Seq C2 exon
GCGCTGCAGTTTCTGAGTAAAGCTCATCGATGTGAAACGCAGGCGGCTGGATGGGAGAAAGACACAGGCAGCTTCAAATCTGTGGTGAAAGGTGCCAGAGACATGGCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918:ENSDART00000151999:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGAAATCCTGGTGCAAG
R:
CATTAGCCATGTCTCTGGCACC
Band lengths:
310-1417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]