RnoINT0157650 @ rn6
Intron Retention
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21741187-21743187:-
Coord C1 exon
chr6:21742990-21743187
Coord A exon
chr6:21741299-21742989
Coord C2 exon
chr6:21741187-21741298
Length
1691 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TGTTCTTTTTTGTTTCCTAGGCA
3' ss Score
10.85
Exon sequences
Seq C1 exon
GTCCTTAAAATTCTGGTCAGGGCAGTGGTTAATGGTATGGCTGACCGGAGTGGAGATATTGCCTCCAGCCTCAAAGGCAAGCTGCAGGAGTTGTTCGGCAGAGTCACTTCAAGGGTGACGAATGACGGAGAAGTCTGGAGACTGTATGCCCAAGTACATGGGAATGGGCAGAGTGAGAAGCCTGCTGAGAATGACAAG
Seq A exon
GTCAGTGCTGGGCCTCTGTCTGTCCTGGGCCTCTGTCTTTGCTACCACAGGTAAAGTAGATCTGCTTTTTTGAGTGAAGAATAAGATCAATAATCTGAAACATAAAACGAATATGCTTAAATTCTGTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATACATGTGAACACGTGTATGAGAGAGCAGCCTCAGGTGATGTTTCTCAGGCACCATCTACCTTCTTTGGGTACTGGTTTGTAATTTATCAAGAGAGCCCAGGGGACCCCAAGGATTCTCTACCTCCCCAGTACTGGAGTTACAAGCACATGCTATGACAGTTTTTGGGTTTTTGTTTTGGTTTGGTTTTTTAAACACGTGGTTCTAGGGATTGAACACAGGTCCTTGTGCTAACAAGGCACTTACTTTATTGACTGAACCATCTTCCAGCCTTCAAATTCAGTATTCAGCACTTTGAATTATGGCCATGCTAAGACTTACAACAATCATCATTTTACATATCATGAGTTTCCTGCTGCCGTCATTCTGTTTCCTGCAGGAGGGTCTCTGTATCATGGGAGGGATTTGCACTGATATGAGGCTACAAAAGGGAAACCCTAACCAGGAGGATGGGAGCAGGAAACTGCAAGTGCTTGACACTGCAGAGACACTGCCCTTCCTGCAAGGCAATAGGTTGTCAGTCCCACTCGATGTGTGCTGTTAGCCTCTTGTTTTCAAGCTCAGAGGAGCCCAGAATATACAAAGTCGGAATCGTTACTTTGTGTTCTTTTCAAAATATCAATCGCAAATCAAATGTACTTGTGTGGGTTTGGAATTAGTCATGGTACAGCTAATCTGTGGGATTCTTAGTTCTCCTGTCCTTCTGTCTGCACAGCTGGCTTCTACTGTGGCCTTGTCAGCCCTCAGAACACAAATTTCACACACGTTCGCGCGCGCGCGCGCGCGCGCACACACGCACACACGCACACACACACACACACACACACACACACACTCCTGCTTTCCATCACACACGTACACATGTGCACACTCCTGCTTTATATCCCCCCATTGCTTCCTGACTTTGTGCTCTTCTGAAAATAAGAACACTGTTACCTGTGAGCTCTCTATCGAGACGTAAGATGTCTGTGAAGTTCTATACTGTTAGCCAGTCCATACGGTTCCCCAAGCTCACACGTCTCAACGGCATCTCTCAGCCTGAGGATCGAGGAACTCTTCACACTTCCTGCAGGTTTCCAAGCCTGGCCTTCATAGTTTCCTAGTTCTGGGAAAGGTGGTCCAGATACATCCTTGGTTTTTTTCTAAAGACTTATTTATTGTATGTGAGTACACTGTTGCTCTCTTCAGACACACCAGAAGAGGGCATCAGGTCTCATTACAGATGGTCGTGAGCCACCATGTGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAACCAGTGCTCTTAACCGCTGAGCCATGTCTCCAGCCCCACCTTGGGTTCTTGAGGTTGTTTGTTGCTTTTGGATGTGCGTCCTCCCCGTCTTTGATGATGATTACGGAGACTCGGCCTCACAGCGCACGCAGATGCTGTTTTGAGTTTGGAATTAGTTCCATATGACTTCCAGGAAACGGTTTGAAATGTGAATGCTCCTTGTTGTTCTGAACGCTGTTCTTTTTTGTTTCCTAG
Seq C2 exon
GCATTCCAGTATCTCTCAAAGGCGTACAAGTGCGACACACAGTCCGGTTGTTGGGAGAAAGATGCTACAGCATTTAAGGAAGTTGTTCAAAGAGCCATAGGACTGGCGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932:ENSRNOT00000006505:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTAAAATTCTGGTCAGGGCA
R:
CATGCGCCAGTCCTATGG
Band lengths:
310-2001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]