MmuINT0167150 @ mm10
Intron Retention
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:74856409-74858120:+
Coord C1 exon
chr17:74856409-74856606
Coord A exon
chr17:74856607-74858008
Coord C2 exon
chr17:74858009-74858120
Length
1402 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TGTTCCTTCTCATTTCCTAGGCA
3' ss Score
10.71
Exon sequences
Seq C1 exon
GTCCTTAAAATTCTGGTCCAGGCAGTGGTTAATGATATGACCGACCGAAGTGGAGCTGTTGCCTCCAGCCTCAAAGGCAAGCTGCAGGAGTTGTTTGGCAGAATAACTTCAAGGGTGACCAATGACGGAGAAGTCTGGAGACTGTATGCCCAAGTGCATGGGAATGGGCAGAGTGAGAAGCCAGATGAGAACGACAAG
Seq A exon
GTTAGTGCCGGGTCTGTCTGTCCTGGGCCTCTGTCCTTGCTACCACAGGTAAAGAAGGCCTGCTTTTTTGAGTGAAGGATAAGTACGATCAATAATCTGAAATATAAAACTAATATGCTTAAATTCAGTGTGTGTGTGCACGTGTACGTGTGTTTGTGTGTGCATACATGTGTGAGAAGAGCCTCGTGTGATGTTTCTCAGGTACCATCCTCCTTCTTTGGGTACTGGCTTGGAATTTGTCAAGAGAGCCCAGGGTACCCCAAGGATCCCCCGCCTCTACCTCCCCTGTAGTGGAATTACAAGCACTTGCTATGTCAGTTTTTGATTTTTTGTTTTTTGTTTTTTTAAACACGTGGTTCTAGGTCCCTGTGCTAACTAACAAGGTAGTTACTTTATTGACAGAGCCATCTCCCAGCCTTTCAAATTCAGTATTCAGTACTTTGAATTACGGCCATGCTAAGACTTACAACATTCATCATTTTACATTTCATGAGTTTCCTGCTGCCGTCATTCTGTCTCCTGCAGGAGGGACTCTGTCCTGCTGCCTCACATGAGGGATCTGCAGTGTTTCGCTCTAAGATGAGGCTACAAAAGGGCAAAGTTAACCAAGAGGCCGGGAGCAGGAAACTGCAAGTGCTTGACACCCTGCAGAGACACCTGCCCTTTCTGCAAGGCAGTGGTGTTGCCAGTCCCACTCCATTTGTCCCGTTAGCCTCTTGTCTTCAAGCTCAAAGGAGCCCAGAATATCCAAGGTTTTACCTCATTGTTTTGTGTTTCTTTTCAAAATATCCACAGCAAATCAATGTACTTGTGTGGGTTTGGAATTAGCCATGGTACAGCTAATCTGTGGGATTCTTTGTCGTTCTCTCATCCTTCTGTCCACACAGCTGGCTTCTACTATGGCCTTGTCAGCCCTCAGAACACACATTTCACGCACACACACATGGGCACACTCCTACTTTCTATCTTCTGTTGCTTTCCGACTTTACTCTTCTGCAAATAGGAGCACTCTTACCCATGAGTTCTCCATCAAGATGTTTAAGATGGAGCAAAAGAGCCTTTTAAATGTCTGTGAAATTATATACTGTTCCCCAAGCTCACTCCTCATTCTCTCCTGCACCTCTCAGCTTGGCAGTTGAGGAAATCTTCACACGTCTACAGGTTTCCAAGCCTGGCCTTCATATTTTCCTGGTTCTGGGAAAGGTGGCGGTCCAGATGCATCCTAGGTTTCTTGTTTGTTGCTCTTGGATGTACATCCTACCCTTTCTTTGATGATTACAGAGACTGCCTCACAATGCAGATGCTGGGTTTTCAGTTTGGAATTAGTTCCATATGACTTTCAGAAAACAGTTTGAAATGTGAATGCTCCTTCTTTTGAATGCTGTTCCTTCTCATTTCCTAG
Seq C2 exon
GCATTCCAGTGTCTCTCGAAGGCGTACAAGTGTGACACACAGTCCAGTTGTTGGGAGAAAGATGCTACAGCATTTAAGGAAGTTGTTCAAAGAGCCATAGGACTCGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078:ENSMUST00000024882:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTAAAATTCTGGTCCAGGCA
R:
CATGAGCGAGTCCTATGGCTC
Band lengths:
310-1712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types