DreINT0170391 @ danRer10
Intron Retention
Gene
ENSDARG00000059722 | ubac1
Description
UBA domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9372]
Coordinates
chr5:50584061-50584348:+
Coord C1 exon
chr5:50584061-50584168
Coord A exon
chr5:50584169-50584251
Coord C2 exon
chr5:50584252-50584348
Length
83 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TTGGTTTCTGTCAGTTTCAGACA
3' ss Score
3.37
Exon sequences
Seq C1 exon
AAGAAGCAAGACAACAAAGCTCCAGATAAGGATGCCATCCTCAAAGCCACAGCAAGCCTGTCCACTCGTAACACTGACCGTACAGTAACACAGCACAACATCAGAGAT
Seq A exon
GTGAGTCTGTTCAGTTCAGTTTACTCTTAAAAGTTTATTCTTTTTTGCATTTGACATTTTTTTTTGGTTTCTGTCAGTTTCAG
Seq C2 exon
ACAGAGCTGAGAAAGATTCTAGTTTCGCTTATCGAGGTCGCTCAGAAGCTGCTGGCTCTGAATCCTGATGCTGTAGAGCTTTTTAAAAAGGCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059722:ENSDART00000138210:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF138811=Rad60-SLD_2=PD(7.3=22.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGACAACAAAGCTCCAGA
R:
GCATCAGGATTCAGAGCCAGC
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]