MmuINT0168897 @ mm9
Intron Retention
Gene
ENSMUSG00000036352 | Ubac1
Description
ubiquitin associated domain containing 1 [Source:MGI Symbol;Acc:MGI:1920995]
Coordinates
chr2:25864681-25866149:-
Coord C1 exon
chr2:25866042-25866149
Coord A exon
chr2:25864784-25866041
Coord C2 exon
chr2:25864681-25864783
Length
1258 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
CTTTCTTTATCCTACTGCAGTTC
3' ss Score
7.87
Exon sequences
Seq C1 exon
AAGAAACAAGAGCAAAAGGCTCCAGACAAAGATGCTATTCTTCGAGCAACGGCAAACCTGCCTGCCTGCAGCACTGACCGGACTGCTGTCCAGACCACCATGAGAGAC
Seq A exon
GTGAGTACCTGCCTAGTGTGGGGCTCGAGGAGAAGCTCCTAAAAGTGCTTGGGGATGGTGCCTGGCACATGCTCGTGGTTCTGGTGTTCAGGAGACTGAGACAGGAGGATGGCTTGAGCTTAGGTTTGAGGCTAGCTTGGATGTTATAGTTAGGACCACCCCTTAGCCCCTTAAAAAATGAATCTGAAACAGAATATTCAGGAACCCTTTACTACTTTTTTAAAAATTTATTTATTATTATATGTAAGTACACTATAAGTGTCTTCAGACATACCAGAAGAGGGCATCAGATCTCACTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTTAGTGTTCTTAACCATTGAGCCATCTCTCCAGCCCCCTTTACTACTTTTGAACTGTTCCATAAATTAAGAATTTTTTTCAAACTACAAAGTTGACAAGATACATGTAGCACTGGACAGACAGACAGCTGTATGGAAATGTAATGTCTTTGCTCTGGGTACAAAGCTTTCAGGGAATAGTCTGAACTCCCCAGTTACTTTGGACAAGGAAATCAAGCTAAAGTCAAAGCCTGCAGCATGCGCACATGGGCCAGCCATGATAGGATGTACTTGTGTGTGCAGTTGGGGAAAGTTGCCACCACTTAACTTCATTAGGTCCCCATCCATCTGGACACTGTTGGAAGCCAGACCTTTCTGGGGTCTCTTTTGAAGAGGTCCTTTAGATAAGAGCTTTGTAATTCTTCAGTGACTGACAGGGAATGTGTCCTTTTCTGGCTTCTGTGGGTTCAGCCCTGGATCCAGCCTCTCAGGGGGCTTTAGTCTGTGGTATCCCACCTCCAGGCCCTATACTAGGCAAGGGGTGCTGCACCAGTCTAGTGTTTTCAGGTTCTTTGTTAGTTTTTGAGACAATAGCCTCACTGTGTAGACGAGGCTGACCTTGAATTCACAGAGATCTGCCTGCCTCTGCCTTCCAGCTCTGAGATTAAAGGTAAGGCCCAATATGCCCTTGTAGATTTGGAGGGCTATGTCTGGGATAGTGTTGCAGATTTAAGCAAGTTTGTTGGACATTCTGAGAAATAATCTTTTTGGTTTGTTTGATTTTTGAGACAGGTTTTTACTGTAGAATTAAGGTTGGCCTCAAGCTCCCAGCAGACTTCTTTTCTCAGCCTCGCAAGAGCAGGGATTACAGGTGTGCATCACTGTACCGGGCATGATCTCTTTCTTTATCCTACTGCAG
Seq C2 exon
TTCCAGACAGAACTCCGGAAGATCCTCGTGTCTCTCATTGAGGTGGCACAGAAGCTGTTAGCACTGAATCCCGATGCAGTTGAATTGTTTAAGAAGGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036352-Ubac1:NM_133835:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF138811=Rad60-SLD_2=PD(9.0=27.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGGCTCCAGACAAAGA
R:
TTTGCCTTCTTAAACAATTCAACTGC
Band lengths:
198-1456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: