BtaINT0156009 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039851 | UBAC1
Description
Bos taurus UBA domain containing 1 (UBAC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076281]
Coordinates
chr11:103525421-103526599:-
Coord C1 exon
chr11:103526492-103526599
Coord A exon
chr11:103525524-103526491
Coord C2 exon
chr11:103525421-103525523
Length
968 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
GTCTTGTGCTTTCACTGCAGTTC
3' ss Score
8.56
Exon sequences
Seq C1 exon
AAAAAACAAGAGCAGAAAGCCCCGGACAGAGACGCTATCTTCCGAGCCACCGCCAGCCTGCCCTCCCACAACATGGACCGGGCCGTGGTGCAGACCAGCGCGAGGGAC
Seq A exon
GTGAGTGCCCGCAGGGGCTTTGTGGCCACAGGGGGCTGAGGAGACCTCCTGAGAGCGCTTGGGAAGCAGGATGTAGGGGGTGCAGGAACTCTGTGTGCTATATTGGAACTTTTTTGTAGGCAAATTAATTCAAGTTAAAAGGTTTGAAGAGACGTTGGGCCAGTAGGATACTATGGGGAAATGTGAGTTTTGTCCTGAGTTTGGCGAAACCTTTTAGAGAGAAACCCGACTCTTGCTTATTTTGGATCGGGAGGTTAAAGCAGAGCTGGAGCATTTCCAGTGCTCCCGAGCCAGGGCCGGGCCAGGACTTGGCGCCCGCTGGGCCAGAGTCGGGGGTGGCGCCCCCAACACTGCAGGTCAGTCTGCGGGCTCTGCACGAGCTGGTCAGTTCAGGAACACGCCTCTGAGGGTCTCCTCCAGAGAGTTCTGTGTTGGCCAGGGCGTCTGAGGCCGGGCACATGTGTCTCTCGCTGGCCAGTGCGTGTTTCACGATGGCCAAGCCTCACTGTCGGGGAGACGGGCAGTTGGTGGGTTTCTGATGACATTCCCAGCAGCCCCCACTGCGTTGAGAAGATGAACTGGTTGCACTGAATGCTAGAGGCCCACAGCAGTGGGACCCATGGAGTCTGCCTGTTTTGTTCAGTGAGGCTTAAGCTCTCAGCTCGCTTAGCGGCCAGCAGGCCAGACGCCTCCTCTGGGCTGGAGCTGAGCGACGGATCCTCTCCCGCCCGCCCTGCTGAGAGCCCTGTTGCTCTTCTCCCTGGTTATCTAGGCGTGATTTGCTGCACAGATTCGGAGTTTCGGGCAGGCGGTATTGTTTCAGATCCAGGCGTGACTTGCCACACAGATTTGGAGTTTCGGGCAGGGGTGTTGTTTCAGATCCATTGACTCACAGATTCGGAGTTTCGGGCAGGGGTGTTGTTTCAGATCCAGGCAGCTTTGTTGAGCGTCTTGTGCTTTCACTGCAG
Seq C2 exon
TTCCAGACGGAGCTCCGGAAAATCCTGGTGTCTCTCATCGAGGTGGCTCAGAAGTTGCTGGCGCTGAACCCGGATGCCGTGGAATTATTTAGGAAGGCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039851:ENSBTAT00000033827:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAGCCCCGGACAGAGA
R:
GTTTGCCTTCCTAAATAATTCCACGG
Band lengths:
198-1166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development