RnoINT0159047 @ rn6
Intron Retention
Gene
ENSRNOG00000017983 | Ubac1
Description
UBA domain containing 1 [Source:RGD Symbol;Acc:1359542]
Coordinates
chr3:3463839-3465220:-
Coord C1 exon
chr3:3465113-3465220
Coord A exon
chr3:3463942-3465112
Coord C2 exon
chr3:3463839-3463941
Length
1171 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGG
5' ss Score
4.17
3' ss Seq
CTTTCTTCATTCTACTGCAGTTC
3' ss Score
8.34
Exon sequences
Seq C1 exon
AAGAAACAAGAGCAAAAGGCTCCAGACAAAGACGCTATTCTTCGAGCAACGGCCAACCTGCCTGCCTGTAGCACGGACCGGACTGCTGTCCAGACCACCATGAGAGAT
Seq A exon
GTGAGGGCCTGCCTAGTGTGGGGCTTGGGGAGGAAGCTCTTTAAAAGTGCTTGGGGATGGTATGGTGACTAGCATGTGCTTGTGGTTCTGGCATCCAGGAGACTGAAACAGGAGGATGGCTTGAGCATAGGTTTGAAGCTAGCTTGGATGTTAGAGTTAGGACCACCCCTCACCCCCCAAAAAAGAATCTGAAACAGAATATTCAGAAACTCTTCTACTTTTGAACTGTTCCATAAATTACAATTTTTTCAAACTACAAAGTGGCTAAGATACCTGTAGCACTGGACAGACAGACAGCTGTTCACAAATGCAGTATCTTCGCTCTGAGTACAGCAAAGCTTCAGGGACTGGTCTGAACTCCCCAGTTACTTTGGACAAGGAAACTAAGCTAAAGTCAAAGCCTGCAGCGTACGCACACAGGCCGGCCATGATAAGGTGTGCTTGTGCCGGCAGAAGTTGGGGACAGTGGCCCCCACTTAAGTTCGTTAGGTCCCGATGCATGTGGACACTGCTGGGAGCTGGACCTCTCCAGGGTCTCTTGTGAAAAGGTTCTTTTGATAAGAGCTTTGTAATTCTTCAGTGACTGACTGGGGATGTGTCCCTGCCTGGCTTCTGTGGGTCCAACCCTGGATCCAGCCTCTCAGGAGGCTTTAGGCTTGTGGTGTCCCATCTCCAGGCCCTGTATTAGGCAAGGCGCTGCTACACCAGTCTAGTGTTACGAGGCTCCCCCCCCCCCCCCCCCCCGGAGCTGGGGACCGAACCCAGAGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCTTTGTTAGTTTTTAAGACAAGTCTCACTGCGTAGACCAGGCTGGACTTGAATTCAGAGAGATCTGCCTGTCTTTGCCTTCCAAGCTCTGAGATTAAAGGTAAGGGCCAATGTGCCCTTTTAGATTCAGAGGGCTAGGATGGGATTTCAGATTTAAGCAAGCTTGTTGGACATTCTGAAAAATAATCCCTTTTTCTGTTTTTTGTTTTTTTTTTTTTTGAGACAGGGTTCTACTCTATAGTTTAGGTGGGCCTCGAACTCCCAGCAATGTTCTTTTCTCAGCCTCGCAAGAGCAGGGATTACAGGTATGCAGCACTGTACTGGGCCTGATCTCTTTCTTCATTCTACTGCAG
Seq C2 exon
TTCCAGACAGAACTCCGGAAGATCCTTGTGTCTCTCATTGAGGTGGCACAGAAGCTGTTAGCACTGAATCCTGATGCAGTTGAATTGTTTAAGAAGGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017983:ENSRNOT00000024352:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGGCTCCAGACAAAGAC
R:
TTTGCCTTCTTAAACAATTCAACTGC
Band lengths:
198-1369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]