GgaINT0126409 @ galGal4
Intron Retention
Gene
ENSGALG00000001713 | UBAC1
Description
ubiquitin-associated domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026645]
Coordinates
chr17:8162909-8163631:+
Coord C1 exon
chr17:8162909-8163016
Coord A exon
chr17:8163017-8163528
Coord C2 exon
chr17:8163529-8163631
Length
512 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GACAGTTTCCTTTTTTGCAGTTC
3' ss Score
7.04
Exon sequences
Seq C1 exon
AGGAAACAAGAGCAGAAAGCTCCTGATAAGGATGCTATTCTCAAAGCAACTGCAAATCTGCCCTCTCGCAACGTAGATCGCACTGTGGCCCAGCACAACATGAGGGAT
Seq A exon
GTAAGTATTCGACTTGACTTTAACTCACACACTAATATCCAAGTAGACTTTTATCTTATATAATCTTTTCTCTTCCATATGAATGCGGATAGGCTTTCTCTGTGAGAGAAATTGAAGTGTGTATAGTGCATATAAAAGTAGATAGTACAATCTGTGTGTAAACCCTAGGTTATTTAGTGATTATGAAATGCTGCACTAAATTATGATTTAAAATGTTTTATTTCTCCCTGGAAAAGCCTCAGTAAACTCTCTGAAGATCTGGCAAACGTGCAGTTCAGTTTCGATCTTGAATAGTTCACGTTTTCACAATGTTTTCTCTGCCATGGCTTTGAAGAGACATTAGTCATAAATTTTGACTTCAGTAGTCGACTGCTGTCTGTGATACTTCCAGCTGTGTCTTCAACAGTGTGGGGGCTACTTTTTCTCTTCTGATATTAACAGCTTCTCTATTAATATTTAATGATATCTGGTAACCTCCTATCTAAATGTTTTGACAGTTTCCTTTTTTGCAG
Seq C2 exon
TTCCAGACAGAGCTCCGGAAGATCTTAGTTTCCCTCATTGAAGTTGCACAGAAATTGCTAGCACTGAACCCAGATGCAGTTGAACTATTTAAGAAGGCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001713:ENSGALT00000002629:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAAGCTCCTGATAAGGA
R:
TTTGCCTTCTTAAATAGTTCAACTGC
Band lengths:
198-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]