HsaINT0176127 @ hg19
Intron Retention
Gene
ENSG00000130560 | UBAC1
Description
UBA domain containing 1 [Source:HGNC Symbol;Acc:30221]
Coordinates
chr9:138838115-138839751:-
Coord C1 exon
chr9:138839644-138839751
Coord A exon
chr9:138838218-138839643
Coord C2 exon
chr9:138838115-138838217
Length
1426 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
CTCCTTTTTTTTCACCACAGTTC
3' ss Score
8.95
Exon sequences
Seq C1 exon
AAAAAACAAGACCAGAAAGCTCCAGATAAAGAGGCCATACTGCGGGCCACCGCCAACCTGCCCTCCTACAACATGGACCGGGCCGCGGTCCAGACCAACATGAGAGAC
Seq A exon
GTGAGTGTCAGCCCAGAGCGGCGGCGGGTGCATGGGGTCCCCGTGTGGGGGATTGCTGTGGGGGGGTTCCTGCGGGGCGGGGCAGCAAGAGGAGATTCTCTGGGAGGATTTGGGGAAGCCGGTGAGCGGGTCTGTAGGACTGCACTATTTTGCATTTTTTCTGTAAATCAAAAATTATTTCCAAGTAAGAGTTGGAAAGCCATCTGAAGGCAGGATTGAAAAGATAGATACCCCTGGGAAAACGTCAATCCGGCCCTGAGTTTGGCAAAACGTTTAGATAGAATTCTGAACCCGAAGCGGGTGGATCACCTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAACATGATGAAACTCCGTCTCTACTAAAAATACCAAAAATTAGCCGGGCGTAGTGGCAGGCACCTGTAATCCCAGCTATTCAGGAGGCTGAGACAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTAAGCCGAGATTGCATCATCGTACTCCAGCCTCGGCAGCAAGAGCGAAACTCCGTCTCAAGAAAAAAAAAAACACACAAATCTGAACCCGTGAGTTATTTTGGGTCAGAACATTCTAAGTTAAAAAAGAAAAGTGTTTGCAGTGCTCACGTGGACGCCGCAGCAGGCAGGGCAGGCACGTGCTGTGCCGGGGTGGGAGGACGGCTGGCTTCCAACTTCATCTGATGCCAGTCCAACCTAAGGGCACTGCTATAAGCCCTGTTTCATTTTAGGAATGAACCTCTTGGGGTGTCTTCCAGAGAGTTCTGTGCTGACCAGGGCATGGTGGCTTTTCCCCAGCAGCCAGCATGTGTGTCTCCCATCCTGTGTGTGTCCGGCTCAGAGGTATTTCTCTAGTGTGGTGTCCGCACCAAGGCTCACACTTGTGTGAGAGTAGGGACAGCTGACGCCTGACCTCTAGGCCCTGTAGCCAGGAGCTGTTCTGGAGGGCATCTCCGGTCCATCCCACGGCTCCTCCTGCCTGGGGAGGACAGTGATGGCCGCCGCAGACGCTGTGTGGCAGCCATGCCTCCACTGGGGGCTGGCAGACTCATGGGGGTGGAGCCTCAGATGATTCTGTTTTCTTCAGTGAAGCCAGAGAGGGTCTTCAGCTTGCCCTGCACCTGCGCCAGCTGGGCCGACGGTTTCCTCACAGGGCACAGGCTGAGTATCGGGCCAGCACTGAGTGACCGTCACCAGGCGTTCCTGTCCCTTTCCACTGGCTTCAGTCCCACCTGCAGGGAGGCTCTTGGCCCTGCCAATCCCCTGCCTTGCCCTCAGCTGATCCTGCTGTCTTGCAAGAAAGCAATGTCATCTCAACTCTCAGAATCAAGAGTTCTAGGACAGGGGAGCAAGTCATAGATCCAAGTAGGTTTGGTGGACATTTAGAGAATTGATCTCCTTTTTTTTCACCACAG
Seq C2 exon
TTCCAGACAGAACTCCGGAAGATACTGGTGTCTCTCATCGAGGTGGCGCAGAAGCTGTTAGCGCTGAACCCAGATGCAGTGGAATTGTTTAAGAAGGCGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130560-UBAC1:NM_016172:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF138811=Rad60-SLD_2=PD(9.0=27.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACAAGACCAGAAAGCTCCA
R:
CGCCTTCTTAAACAATTCCACTGC
Band lengths:
206-1632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)