DreINT0171871 @ danRer10
Intron Retention
Gene
ENSDARG00000087341 | unc5c
Description
unc-5 homolog C (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-9196]
Coordinates
chr10:1062734-1069131:+
Coord C1 exon
chr10:1062734-1062793
Coord A exon
chr10:1062794-1068939
Coord C2 exon
chr10:1068940-1069131
Length
6146 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GTGTGTGTGTGTGTGTTCAGCGG
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTTCCTTATATCAGAAGTCCTCCGAGCACACAGACAAGAGCAATGCTCTGCCACATCCAT
Seq A exon
GTGAGTCCCTCATTTCATTGCTTTCTGTTTGCATGCGTCTCCAATCCTTCCTTATTTCCTCCTTTTTTCTTTTCTCAACTCATGCCATCCCTTTTTTACTCTCAGGAGTCTTTAAAGGGATAGTTCACCCAAATATGACAATTGACTTACTACTTACTGGCTCTCTAGTGCTTAAACATTTTTTAAAAAGAAACTCTAAGGTTTGAAAGTAGAGTAGTAGAAAGTAGAAGTAAAGACTAAAGAAATTATGACATTCATTTTTGGGTGAATAATCCATTTAAATGCTAAAAAGAATACATAAACTAATCAAAGGTGCTATCATCTTTCAATCTACACATGAAAAATGCCATACTAGTTTTACTATAGTGTATTTGAACCATAGTAAAGTGTATTTTACTGTATTTATATATAATAGTATTTACAACACTTTATAATATTATCTGTAGTGAACTGATGAACCATAATAAATGCTGTAATGTACTTTAGTTTTTACTTTAATAAATGGTGGTGTATTAAAGTATAATATAGTTGTAGAAAACTACAGTGTTGGGTCATTTGTTTATATAGCTGTTGTTGTTGTGTTGCCATAGCAACTATAGAATCACTGTAACAGACTAATTACTGCAGTTCTTAGGTTACCATAGCAACTATAGAATCACCACAACAGATTAATCACTGTAGTTGTTGTGTTGCCATAGCGACTATAGAATCACTACAACAGATTAATCATTGTAGTTGTTGTGTTGCCATAGCGACTATAGAATCACCACAACAGATTAATCATTGTAGTTGTTGTGTTGCCATAGCGATTATAGAATCACCACAATAGATTACTGTAATTGTTGTTGCTATAGCAACTATAGAATCACCACAATAGGTTAATCACTGTAGTTGTTGTGTTGCCATAGCGACTATAGAATCACCACAACAGATTAATCACTGTAGTTGTTGTGTTGCCATAGCGACTATAGAATCACCACAACAGATTAATCACTGTAGTTGTTGTGTTGCCATAGCGACTATAGAATCACCACAATAGATTACTGTAATTGTTGTTGCCATAGCAACTATAGAATCACCACAATAGGTTAATTACTTTAATTGTTTGTTGCCATAGCAACTATAAAATCACCACAACAGGTTAATTGCTTTAATTGTTTGTTGCCATAGCAACTATAGAATCGCCACAAAAGGTTAATTACTTGAACTGTTGTGTTGCTATAGCAACTATAGAATCACCACAACAGATTAATTCATGTACGTTACTATAGTATGGTTTAAAAGCACTATAGTATTACTGCAGTATTTTAAAAAAAAATTTTCTGGTGGTTTATAACTTTTTTGCTGCCTTAAGTACAGGTGACCATCTAAACCAGCTTAGACCAGAAAACAACCGAAGCAGACTTTTATTATGTGACCAAACCGCATAGCTTGATCTCTTTGACACTGAGAGGTCGAGTAAACCAGCTTAGATCAACTTTAAAATGTCTGTTAGCTGTTTGTTTGGCTAGTTTCTGGGTTTATATGCCTCTTGTGTTTTTAAGTTTAGTTTTTGTGTGTTAATCCTGGACCAATTTTGACCAGCTAAAGACCTCAACATATCTAGTCAAGCAATTATGAGTGTTGTTTTTGTGTGTATAAGTGTGTGTAGGAGTGTTTGTGTGTGCACATGTGTGTTTGTGTATCTGCTTGTGTTTGAGTGTGTGTGTGCGCGTATGTAACTGCTGTGTGTGTGTAACTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGCACGCGTATGTAACTGCTGTATGTGTGTGTAACTGCTTGTGTGTGTGTGTGTGTGTGTGTGTCCAGCTCAGTAATGCGTTTCATTTGCAGGCTGTTTTCCTGCTCTGCTCTTGTACCTGCGCTCGCCGGTGTTCAAAGAAACGTATTAATCTGAGCGCTACATTTTAATGCTGACCCCCGGTGAGTGTGTGTGTGCTTTATCATCAAAGGCCGAGCGCGGGCCGTCCGGACGGCAGACTCACGCGGGGGAGATGATATCGCTGGACTTTCATCACTGCGTCTGCATCCGCTCCAGTATCAGCCCTCCTGCAGAAGCTCATCATTCACAGCTAAACATCAGCCAGAGAATGAGGGAGCCTTTCACATGTGCGGGTTTCTCAGCAGCAGAAGTGGATGACTTGGTCAACTTAGAGCTCAGTGAATAGGAGAATACAACTAATTATTATTCTACAATCCTATCAGCTGAAATATTTAGAGAGAAAATCCAGAATGGTGTTATCAAGACTTTCAGAAAGAGCAAATCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGATAACGGCAGCCGGAAGAGAGAATAATGTCAGATTTACAAAACACACTGCGTTAGAAACACCATGCATAAGTGTGTGTGTGTGATAATAATAATTCCTCACATTTATATAGCACTTGGACACTCAAAGCACATTTTTGGGGGGGGCTCTTCTCATCAAGCACCAGTGTGCAACATCCACTTGGATGATGCGACGGCAGCTATTTTGCGTCAGACCGGACACCAGCTGATTGGTGGAGAGGAGCAAAGTGATGAAGCCAGTTATGATATGGGGATGGTTAGGAGGCCATGATGGTAAGAGGCCAGTGGGCAGATTTGGCCAGGATGCCAGGGTTAAACCCCTACTCTTTATTGAAGGACATCCTGGGATTTTTAATGAGCACTGAGAGTCGGGACCTCGGTTGAACCTGGCATCTGAAAGACGGCGCTTACTGAGCAGTATAGATTCTCCATTATTATACTAGGGACCCACACAGACTGCAGGTTGAGCACCCCCTGCTGGCCTCGCTAACACCACTGCCAACAACAACCGAGCTTTCCCATGTGGTCTCCCATCCAGGTACTGACCAGGCGCAGCCCTGCTTAGCTTCAGTGGTCAATTATGTGAGAGTTGCAGAGAGCTAGCGTGTGTGCATGCTTGCGCATGTGCACATGTGTGTGTGTGCTAGGAATTTAACGACTATTAAAGTGCACTTCAAAGTCGAGTCGACTAGTCGCTGATGTCGTCATCAACAAAACACAGGATGCAAATGTTGTGCAACACGCCACACTTTGCTATTTCAAGTGTTCACACTTAGATAGTTAGCTGCTTGACGCTCTTCGTAAGTTTGGCATGCTGTCCTGGTAAAAAAATTTAAGCTCGGAGATAATTGAACGCTACGGGGCGGTATGACGCCATTCCTTTTCACACTAACCAGCTGACCACTCACCTCCATTTGGATGGTTTTACTGCAGTTACAGTTAGCTTGCCGCTTACTGTATGTTGGCAGACTTGAGACGTCAAGTGGAGTTGACCATGATGACAGGGTTCGAGAACAGTTCCAGAAAGCAGGTAAAACGATAGCAAAAACCAAAACATAAAAGAAAAAAGTAATAACCCTGCTGAAAAATCCAGTTTAAACCAGCCTAGACTTGTCAGCTGGTTTTAGCTGGTCGACCAGGTTGGTTTTAGAGGGGTTTTGGCCACTTCCAGGCTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAATAAATGAATGAATAAATAAATGAATGGATTAATTAATGAATGAATAAAAGAATAATCGAATGAGTGAACGAATAAAAAAAATAAATAAATAAATAAAAGAATGAATAAGTAAATAAATAAATAAATAAATAAACGAATGAATGATTAAATAAAATAATGAATGGATGAATGAATAAAAGAATAATTGAATGAATGAACGAATAAAGAATAAATAAGTGAATAAATAAATAAATAAATAAATAAATAAATAATGAATGAATGAATGAATGATTAAATAAATAATGAATGGATGAATGAATAAAAGAATAATTGAATAAATGACACTGCACACACACCTGGAGGAACTCCTTCAGTCCACAACAGAGCTGCTTTTTTATTTACTTTTTGATCTTTTTCTTTCTGTCTTCTTTCTGTTTTGGATCGAGAAATAAACTATAATCCATCCTGTGAAGCATCTGCTGTTGTGTAGGGAGCCGTGCAGGTCTGGAATGTAATTGGCGTGTGCCTATAATCTGCATTTGGAGGAAAAATTGCGAAAGAGAAAACACAGAAGACTGTAATGAGAGACGCATATGAAGATTGAGGAGTGCTTATAAGAAAACAACACCTTGATGAGCTAACGTTTAAAATTAATATCAATACATATTACTATTGTTATTGAGTAGTATTAGTATAGTATTGGATAGTGTAATGTTCTGTACAACAACAGTCACATTATAATAATAATAATTATTATTATTATTATTATTAACATTAACATTATTATTAATTGTATTATTATTATTATTATTATTATTATTATTATTATTATTAACGTTATTATTATTATTATTATTATTATTATTATTGTCAACATTATTATTATTATTATTTTATTATTATTAACATTAACATAAGTAGTAAAATTATTATTAATAATAACATTAATATCATTGTTGTTGTTGTTGTAGTTGTTATTGTTATATTATTATTATTATTATTATATGAAATTGAATAAAGCTAATATATATTTTAATAATAATTATTATTATTATTCATTCATTCATTTTCTTGTCGGCTTAGACTCTTTGTTAATCCGGGGTCATCGCAGCGGAATGTTTTGCCAACTTTTGTGTACAAAAATATTGCTTTTTAACCCTTTGACTGCCCCTCTACGGTTGTCCATTTTTTCACTGTTTTAAATAGTGACTGTCAAAGTCGTTTAAAAAGTGGTTTAGACACAAACAGCATTAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATACAGAGATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATAAAATTTTTAACAGGAGTGGCACAGTGACTCAGTGGTTAGCACATTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAGCCTCGGCTGGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTCCCTGTGTTGGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAACACATGTGCTATAGGGGAATTGAACTAAATTGGCCATAGTGTATGAGTGTGTGTGTGTGTGTGTGAACGAGTGTGTATGGATGTTTCCCAGCACTGGGTTGCGGCCGGAAGGGCATCCACTGTGTAAAACATATGCTGGAATAGTTAGCAGTTCATTCTGCTGTGGTGACCCCTGATAAATAAGGCACTAAGGTGAAGGAAAATGAGTGGATTTTATATAATTCTGTTTGTTTCACTCTTAGATAGCCTTATTCTAGTATTTAAATATAATCACAACATATATTACCAGTGCTTTTTAAATCACCCCCTGAATCAGAGAGGTTTACAGTGTGTGTGAATCTGTAGTGTGTGTGTGTGTGTGCGTGTCAGTGAATGTGGTTTATTGTACTCGTGGCTGACAGCGCCCTCTGCTGGTGCTCTACAGCTCTATCACTGCAGACACACGAGTGCAGCAGACTCAATCAGAGACGTGTGTGTGTGTGTGTGTGTTTCTACACTACTCTCCTGCAACTGTGCATAGCTGGAATGTTTCACAACCTGTAATATTATATCTTATATTCTCTTTGTTCTTCTATGTTAAGCTGCTTTTACACACAATATATTTAAAAAGAGCTATCGAAATAAAGATGAGTGAATTCATTTGTGTGTGTGTGCGTGTGTGCATGTGTGTGTGTGTTTGTTTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTTCAG
Seq C2 exon
CGGCCCCTAGCACAGATGACGTGGCGCTGTACGTGGGCATCGTGATCGCCGTCATCATGTGTCTGGTGATCTCGGTGATCGTGGCGCTCTTCGTCTACAGGAAAAACCACCGAGACTTCGACTCGGACATCATGGACTCATCTGCGCTCAACGGAGGATTCCAGCCTGTCAACATCAAGACGGCACGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087341:ENSDART00000123405:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150281=PTCRA=FE(12.8=100),PF128772=DUF3827=PU(16.4=52.4)
A:
NA
C2:
PF150281=PTCRA=PD(19.2=46.2),PF128772=DUF3827=PD(82.1=84.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]