RnoINT0160624 @ rn6
Intron Retention
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247349526-247351691:+
Coord C1 exon
chr2:247349526-247349582
Coord A exon
chr2:247349583-247351499
Coord C2 exon
chr2:247351500-247351691
Length
1917 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
GTTTCCCTCTCTCTTTCCAGCTG
3' ss Score
12.73
Exon sequences
Seq C1 exon
GATTCATTTACCCCATTTCAACTGAGCACAGAACCCAGAGTGAATATGGATTTTCTT
Seq A exon
GTAAGTTTGATGTTTGGGCTTTATGTTGGGAAATAACCCTTTAACGTTATTGCCCCCATTCAAGTTTGCCTTTCCTCGGCTCCCAGATGTGCGCACAGGAAATAGGAGCCTAATGTATTCTAACATGAGAAAACAAATTAGATTTTCGATACCGAAGAGAAGAAAGGGTCATTTCAAGTCTCTGCCAGCTTGAAAAGCTATCAGTCTACCATTGAAAGCATGCATCCCTATCACTGAGAAAACATATCCTGAAATTGGCTGGTATACATAAAGGGCAGGGTTCAAACACTCAAAAGGAACAGTTGAGAAAATGCAGATCTGTTGAGCTATACATCATGAAGGAGCACTGGAAAGCATTAAGGACTAGATATACTATTCTATCCAGAGTTATGAATTCCTCTACAGGGTCTCCAATAAAACCCCTCAGTAAAGTAGAGGCAGCATTTTGACAGCAGTGGTCACATAATGAGGAATGTTGGGATGCTGAAGAGCTGCTGTCAGTATTGACTGGATTGATGGGAAATTTGAAATACTGGGAAGGGTGATATTTTTTTTCAAAGAGGGCATTTTCCAGCTGTAGATTTATAAAAATGCCAGTGTAATTAAAGACTGGGACACAAGAGTGTGGGTAATTACTGAGAACCCCTGTCCAATCAAATGATGAGTTATTCCCACATGCAAACCATGTGTCTTAGGAGAGAGGAGTAGGTTTCTCGAATTTTAGATCACAAAATCTATAGATTTAAAAATCCTCTCCCCTGCCTCCCAAAAATGTATATGTATATAAATTGACCCTGGCATTTTGAGTTGTTCTAGACTGCCAGAAGCATCAATTTAACTATCTCTTCTTCTACAGTGAGGAAGCTGCAGCTCTGGTTAATTTGCTCAATATTTCTGATGGGTCTAAGAACAAAGACCCAACAATGTAAAACTGAGGCAACAAACCTTTCTTTTTATCTGTTTTATTTTAATAACCAGCTTCTGTCACCTTCTCCATTTCAATCCAAACATGTTTCATGCCACCAAACAACAGGCACCATTTATAAGAATTCTTCTTCTTGTTTTAATATTACCTAGAAATAACCCCCTATGGAAGGCACCATGTGATGGTCAAATATTTACCTGCCTCCTGGGGTAGCCTGACCTTTCTGATCATTGACCAAGACCTTTATTTATGCAATTAATCATAGACCTATAGCTTATTCCCATAATAAGAAGCTCTACCAATGGCCCACAGGAAGCTCGAAATGGGAAATAATACTGTACCTGCATCAGAAGCTGGAATTCACATTAGCTTCCGCCCTGGATCTGGGCTTCAGAGAGCATACCTTTCTAATCCACCATGCTTGCTCCTCTCGTTAGTTTTGCTGTATTCTCACAGCCCCCATCCATTCTCACAAGGAAGGAAGGGGAAGAGAGAAGAGTGTATAGGAAGTAATTTTATGACTTGAAATGATACCTAGAAAAACATCTTGGTTCAATCCACATATAGATTAAAACCATACCAGATGTGTCTGACAGTGTTTATGGCTTTTTTTTTTGAACTATCAATGAATTAAAAAAACACTTCCGAACTTTTTTTTACCTGAAAGGAGTAGTCATAAAATTTTTATTTCCCCTGGCTTGGAATGGGTTGGGCGCCAGTTTCTTTAAATGCCTCACAATAAATAGTCTGTTATGCTGCCCAATTATAAGATAGATTAGTGGGTGGATTGATGCAGAGTGAGAAAGAAAAAGAAATCAGAGATAATTTTCCACTGAAAAGCCACAGTCATTTTATATAGCTTTTGAAATAGACTTGAAATTAACCCATAAAAAATGGCAATAAATGTCTGAAAAAAAATTACCGCAATACACATGTGTTCTGCGGGAAGTTTGTACAAGCAGTTGGTCGGATGTTTCCCTCTCTCTTTCCAG
Seq C2 exon
CTGCTCCTGACTCAGATGACGTTGCTCTCTACGTTGGGATTGTGATCGCTGTAACCGTTTGTCTGGCAATCACTGTTGTGGTGGCCCTGTTCGTGTATCGCAAGAACCACCGTGACTTTGAGTCTGATATCATTGACTCCTCAGCACTCAATGGCGGCTTTCAGCCTGTGAACATCAAGGCTGCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071:ENSRNOT00000050330:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTACCCCATTTCAACTGAGCA
R:
CTTGTCTGGCAGCCTTGATGT
Band lengths:
246-2163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]